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AT5G51230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : VEFS-Box of polycomb protein
Curator
Summary (TAIR10)
Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.
Computational
Description (TAIR10)
EMBRYONIC FLOWER 2 (EMF2); CONTAINS InterPro DOMAIN/s: Polycomb protein, VEFS-Box (InterPro:IPR019135); BEST Arabidopsis thaliana protein match is: VEFS-Box of polycomb protein (TAIR:AT4G16845.1); Has 297 Blast hits to 235 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 2; Plants - 148; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioGrid:20443eggNOG:ENOG410YJ29eggNOG:KOG2350EMBL:AB023044
EMBL:AB053171EMBL:AB053262EMBL:AY140086EMBL:BT008388
EMBL:CP002688EnsemblPlants:AT5G51230EnsemblPlants:AT5G51230.1entrez:835198
ExpressionAtlas:Q8L6Y4GeneID:835198Genevisible:Q8L6Y4GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006349GO:GO:0006351
GO:GO:0009908GO:GO:0009910GO:GO:0030154GO:GO:0046872
hmmpanther:PTHR22597hmmpanther:PTHR22597:SF0HOGENOM:HOG000083848InParanoid:Q8L6Y4
IntAct:Q8L6Y4InterPro:IPR019135KEGG:ath:AT5G51230OMA:QMCHEDS
PaxDb:Q8L6Y4Pfam:PF09733Pfam:Q8L6Y4PhylomeDB:Q8L6Y4
PRIDE:Q8L6Y4PRO:PR:Q8L6Y4PROSITE:PS00028Proteomes:UP000006548
RefSeq:NP_001119413.1RefSeq:NP_199936.2RefSeq:NP_851168.1STRING:3702.AT5G51230.1
TAIR:AT5G51230tair10-symbols:AtEMF2tair10-symbols:CYR1tair10-symbols:EMF2
tair10-symbols:VEF2UniGene:At.9695UniProt:Q8L6Y4
Coordinates (TAIR10) chr5:+:20824153..20829344
Molecular Weight (calculated) 71684.70 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.39
Length 631 amino acids
Sequence (TAIR10)
(BLAST)
001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)