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AT2G45250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integral membrane protein hemolysin-III homolog
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Integral membrane protein hemolysin-III homolog; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38280.1); Has 111 Blast hits to 109 proteins in 30 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi - 6; Plants - 75; Viruses - 4; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J22GeggNOG:ENOG4112AMGEMBL:CP002685EnsemblPlants:AT2G45250
EnsemblPlants:AT2G45250.1entrez:819133ExpressionAtlas:F4IW42GeneID:819133
GO:GO:0006351GO:GO:0007049GO:GO:0070176Gramene:AT2G45250.1
hmmpanther:PTHR34555hmmpanther:PTHR34555:SF1InterPro:IPR018737OMA:EMQRVSA
PaxDb:F4IW42Pfam:PF10044PRIDE:F4IW42ProteinModelPortal:F4IW42
Proteomes:UP000006548RefSeq:NP_182050.2TAIR:AT2G45250UniGene:At.47234
UniGene:At.48954UniProt:F4IW42
Coordinates (TAIR10) chr2:+:18661464..18662550
Molecular Weight (calculated) 22303.10 Da
IEP (calculated) 6.53
GRAVY (calculated) -0.68
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKTPSLGAE LLCSYSLSDP SPSPSPFSSE MEIPEGTPKD SEKAIEQDTV SSIGVKKPPV DSPATTNAAS GRLVYVRRRV EVDTSKAAAS TTNPNPPPTK
101: APPQIPSSPA QAQAQEPTPT SHKLDWEERY LHLQMLLNKL NQSDRTDHVQ MLWSLSSAEL SKHAVDLEKR SIQFSLEEAR EMQRVAALNV LGRSVNSIKS
201: TSNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)