AT3G21350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA polymerase transcriptional regulation mediator-related | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MED6; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med6, metazoa/plant (InterPro:IPR016820), Mediator complex, subunit Med6 (InterPro:IPR007018); Has 344 Blast hits to 344 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 139; Plants - 37; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7517106..7518587 | ||||||||
| Molecular Weight (calculated) | 28801.10 Da | ||||||||
| IEP (calculated) | 4.67 | ||||||||
| GRAVY (calculated) | -0.51 | ||||||||
| Length | 257 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSSLLSAAT ADTFNGNAAD QIPPPLQPPG TDMTGISFRD QLWINSYPLD RNYIFDYFAL SPFYDTTCNN EILRRRSIHP LDLSHLSKMT GLEYMLTDAT 101: EPNLFVFRKQ KRDGPEKVTP MLTYYILDGS IYQAPQLCSV FAARVSRTIY NISKAFTDAA SKLETIRQVD TENQNEPAES KPASETVDLK EMKRVDVILT 201: SLYRKLAPPP PPPPFPEGYV SQEALGEKEE LGTQGGESQP PQVDPIIDQG PAKRMKF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)