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AT3G52860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYSUeggNOG:ENOG4111X20EMBL:AK117706EMBL:AL132969
EMBL:BT005037EMBL:CP002686EnsemblPlants:AT3G52860EnsemblPlants:AT3G52860.1
entrez:824452GeneID:824452Genevisible:Q9LFA5GO:GO:0006351
GO:GO:0006355GO:GO:0016592GO:GO:1900055Gramene:AT3G52860.1
hmmpanther:PTHR39117HOGENOM:HOG000030565InParanoid:Q9LFA5IntAct:Q9LFA5
KEGG:ath:AT3G52860KO:K15141ncoils:CoilOMA:IGLQRED
PaxDb:Q9LFA5Pfam:Q9LFA5PhylomeDB:Q9LFA5PIR:T47543
PRIDE:Q9LFA5PRO:PR:Q9LFA5Proteomes:UP000006548RefSeq:NP_190854.1
STRING:3702.AT3G52860.1TAIR:AT3G52860UniGene:At.24701UniGene:At.60941
UniProt:Q9LFA5
Coordinates (TAIR10) chr3:-:19591998..19592741
Molecular Weight (calculated) 17962.40 Da
IEP (calculated) 6.03
GRAVY (calculated) -0.98
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYQQKPPQS SDPSPSPPDR PPGIRSPETP SNNQNNDIED IMACVTALEA ALLPCLPARE LQAIDRSPHP SHQIDVERHA RDFMEAAKKL QLYFMGLKRE
101: DRAPSRAESL KKDIAVMEEE LKTKDELIKK HMRLFQESQK LVKEQIEKHR DELEKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)