AT1G18680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.503 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HNH endonuclease domain-containing protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HNH endonuclease domain-containing protein; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); BEST Arabidopsis thaliana protein match is: HNH endonuclease (TAIR:AT3G47490.1); Has 84 Blast hits to 84 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6432133..6433434 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 20291.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.41 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||
| Length | 186 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSSFSASFT NSTTAAAVPP PSPPSSPSRS NVKSNGEERP RFFDGKAKNK CWANADIVPG RHPERWRKDV AGNIVCKRFG NCNGCLCFEY DHIVPYSKGG 101: ESIAENCQIL QTRVNRFKSA QENVDATTLK SYSCGLQFTD KELDVIEMAV YGDVLRPGKE CRCKTVAELL GQSKSKDGKA ACELPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)