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AT5G06340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nudix hydrolase homolog 27
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nudix hydrolase homolog 27 (NUDX27); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase (InterPro:IPR020476), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 26 (TAIR:AT3G10620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G06340-MONOMEREC:3.6.1.-eggNOG:ENOG410JC4UeggNOG:ENOG410XSR5
EMBL:AB006700EMBL:AF372941EMBL:AY113163EMBL:CP002688
EnsemblPlants:AT5G06340EnsemblPlants:AT5G06340.1entrez:830522Gene3D:3.90.79.10
GeneID:830522Genevisible:Q9FNH4GO:GO:0009507GO:GO:0034432
GO:GO:0046872Gramene:AT5G06340.1HAMAP:MF_00298hmmpanther:PTHR11839
hmmpanther:PTHR11839:SF10HOGENOM:HOG000066722InParanoid:Q9FNH4InterPro:IPR000086
InterPro:IPR015797InterPro:IPR020084InterPro:IPR020476InterPro:IPR022927
KEGG:ath:AT5G06340OMA:IVGERIQPaxDb:Q9FNH4Pfam:PF00293
Pfam:Q9FNH4Pfscan:PS51462PhylomeDB:Q9FNH4PRIDE:Q9FNH4
PRINTS:PR00502PRO:PR:Q9FNH4PROSITE:PS00893PROSITE:PS51462
ProteinModelPortal:Q9FNH4Proteomes:UP000006548RefSeq:NP_196252.1scanprosite:PS00893
SMR:Q9FNH4STRING:3702.AT5G06340.1SUPFAM:SSF55811TAIR:AT5G06340
tair10-symbols:ATNUDX27tair10-symbols:NUDX27UniGene:At.7280UniProt:Q9FNH4
Coordinates (TAIR10) chr5:+:1936467..1937911
Molecular Weight (calculated) 25864.90 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.37
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVKASGFIG KSAISVHLDF SSFPVKFSCL KQFSVSSPKP LVVLSVALSS PARTVESPPV GYRKNVGICL VSPCRKIFTA SKIHIPDTWQ MPQGGADEGE
101: DLRNAAFREL REETGVTSAE FIAEIPNWLT YDFPREVKDK LNRKWRTSYK GQAQKWFLFK FTGKEEEINL LGDGTAKPEF KVWSWMLPEQ VIEHAVYFKR
201: PVYEHVIKQF NPYFVDEEKD SMNSSKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)