AT1G33290.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10420.2); Has 1039 Blast hits to 1033 proteins in 441 species: Archae - 8; Bacteria - 771; Metazoa - 34; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:12074125..12075989 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42253.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||
| Length | 379 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGVCVPWGG GACRLISPIR RRFPVSSSVA SLALPDSSSM IVDDNLGAFL EILPKDLRHR LLNDSRRNQL VEVIMDLGRP PEARYLGEPG GQYLRNNEVS 101: MEELEDAQEL VGEFGADNRA GIEGTLHRIS AIRNRKGFIV GLTCRVGRAV SGHIDMLYDL LHYGKSILFV GRPGVGKTTV LREIARVLSD EFQKRVVIID 201: TSNEIGGDGD IPHSAIGGSR RMQVPKPSLQ HKVMIEAVEN HMPQVIIVDE IGTEAEALAC RSIAERGVML IGTAHGEQLQ NIIKNPTLSD LIGGIETVTL 301: GDEEARARRS QKSILERKAP PTFYFLIEMR ERDYWIAHQT EKSVDMLLRG RNPMVEVRRR DEEYKVVIER WKAYDGQGI |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)