AT5G17710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Co-chaperone GrpE family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1241 (EMB1241); FUNCTIONS IN: copper ion binding; INVOLVED IN: protein folding, embryo development ending in seed dormancy; LOCATED IN: thylakoid, chloroplast, chloroplast stroma; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805), GrpE nucleotide exchange factor, head (InterPro:IPR009012); BEST Arabidopsis thaliana protein match is: Co-chaperone GrpE family protein (TAIR:AT1G36390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5839560..5841639 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35495.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.25 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 324 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGLLKTPSL HLTPTLLHAP SVPFKPFCVS FAGGRNVSVS LSRRASLRSV SSGYPLRLLN LVPFASGEAE TTETEVESNE PEETDGAVDV ENENASAEEG 101: EAEEEEAAVI TALLKSYKEA LADNNEGKIA EIEASLKSIE DEKFLLADKV ASLSNELSVE RDRLIRISAD FDNFRKRTER ERLNLVSNAQ GEVVENLLAV 201: LDNFERAKSQ IKVETEGEEK VTNSYQSIYK QFVEILGSLG VIHVETVGKQ FDPMLHEAIM REDSAEYEEG IVLEEYRKGF LLGERLLRPS MVKVSAGPGP 301: EKPLEAEGEE ATAQGSAEEE SSSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)