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AT3G52380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloroplast RNA-binding protein 33
Curator
Summary (TAIR10)
chloroplast RNA-binding protein
Computational
Description (TAIR10)
chloroplast RNA-binding protein 33 (CP33); FUNCTIONS IN: RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B (TAIR:AT5G50250.1); Has 514069 Blast hits to 499112 proteins in 22048 species: Archae - 10752; Bacteria - 302541; Metazoa - 101965; Fungi - 16255; Plants - 33338; Viruses - 35348; Other Eukaryotes - 13870 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AL050300EMBL:AY039607
EMBL:AY062455EMBL:AY078022EMBL:AY085279EMBL:CP002686
EMBL:D31714EMBL:D31715EnsemblPlants:AT3G52380EnsemblPlants:AT3G52380.1
entrez:824403Gene3D:3.30.70.330GeneID:824403Genevisible:Q39061
GO:GO:0000166GO:GO:0003723GO:GO:0006397GO:GO:0009507
GO:GO:0009570GO:GO:0009579GO:GO:0030529Gramene:AT3G52380.1
hmmpanther:PTHR24012HOGENOM:HOG000276232InParanoid:Q39061InterPro:IPR000504
InterPro:IPR012677KEGG:ath:AT3G52380ncoils:CoilOMA:FSVVEHI
PaxDb:Q39061Pfam:PF00076Pfam:Q39061Pfscan:PS50102
PhylomeDB:Q39061PIR:S53494PRIDE:Q39061PRO:PR:Q39061
PROSITE:PS50102ProteinModelPortal:Q39061Proteomes:UP000006548RefSeq:NP_190806.1
SMART:SM00360SMR:Q39061STRING:3702.AT3G52380.1SUPFAM:SSF54928
TAIR:AT3G52380tair10-symbols:CP33tair10-symbols:PDE322UniGene:At.65006
UniGene:At.71002UniProt:Q39061
Coordinates (TAIR10) chr3:+:19421619..19422855
Molecular Weight (calculated) 35746.20 Da
IEP (calculated) 4.31
GRAVY (calculated) -0.47
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSAYCSSAV AVSAAATASS AATFNPLLSS HSNSQLFYRF TPKSFKLVAN CPNPLILHSN IRRHRFFCAA ETEASSADDE IQASVEEEEE VEEEGDEGEE
101: EVEEEKQTTQ ASGEEGRLYV GNLPYTITSS ELSQIFGEAG TVVDVQIVYD KVTDRSRGFG FVTMGSIEEA KEAMQMFNSS QIGGRTVKVN FPEVPRGGEN
201: EVMRTKIRDN NRSYVDSPHK VYAGNLGWNL TSQGLKDAFG DQPGVLGAKV IYERNTGRSR GFGFISFESA ENVQSALATM NGVEVEGRAL RLNLASEREK
301: PTVSPPSVEE GETEEASLES NEVLSNVSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)