AT2G24060.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Translation initiation factor 3 protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Translation initiation factor 3 protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, N-terminal (InterPro:IPR019814), Translation initiation factor 3, conserved site (InterPro:IPR019813), Translation initiation factor 3, C-terminal (InterPro:IPR019815), Translation initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: Translation initiation factor 3 protein (TAIR:AT4G30690.1); Has 20358 Blast hits to 11134 proteins in 2694 species: Archae - 56; Bacteria - 8982; Metazoa - 2020; Fungi - 711; Plants - 802; Viruses - 337; Other Eukaryotes - 7450 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:10229453..10231390 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 35143.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.65 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 312 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAGITSSTVG FNAVFTGITK TVSSHSLFSV DSKLCSLRLS KTELSFTNLT PSPRRAFAVT CRFGGGGGGY RFSGDNRRGR PKEAEIDEAL DISSIRSATV 101: RLIDGQQNML GLVSKDEAVR MADDAELDLV ILSPDADPPV VKMMDYSKYR YEQQKRKKDQ QKKTTRMDLK ELKMGYNIDQ HDYSVRLRAA QKFLQDGDKV 201: KVIVSMKGRE NEFRNIAIEL LRRFQTEIGE LATEESKNFR DRNMFIILVP NKEMIRKPQE PPTRKKKKTA ENEASASAAE ITAEPEPEPE PEPEPEPEPE 301: PEPEPEPLQI DS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)