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AT2G24060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation initiation factor 3 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation initiation factor 3 protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, N-terminal (InterPro:IPR019814), Translation initiation factor 3, conserved site (InterPro:IPR019813), Translation initiation factor 3, C-terminal (InterPro:IPR019815), Translation initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: Translation initiation factor 3 protein (TAIR:AT4G30690.1); Has 20358 Blast hits to 11134 proteins in 2694 species: Archae - 56; Bacteria - 8982; Metazoa - 2020; Fungi - 711; Plants - 802; Viruses - 337; Other Eukaryotes - 7450 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0290eggNOG:ENOG410IECTEMBL:AC005170EMBL:AY072160
EMBL:AY088131EMBL:AY096414EMBL:CP002685EnsemblPlants:AT2G24060
EnsemblPlants:AT2G24060.1entrez:816940Gene3D:3.10.20.80Gene3D:3.30.110.10
GeneID:816940GO:GO:0003743GO:GO:0009507Gramene:AT2G24060.1
HAMAP:MF_00080hmmpanther:PTHR10938hmmpanther:PTHR10938:SF0HOGENOM:HOG000030813
InterPro:IPR001288InterPro:IPR019813InterPro:IPR019814InterPro:IPR019815
KEGG:ath:AT2G24060KO:K02520OMA:VPNKEMIPANTHER:PTHR10938
Pfam:PF00707Pfam:PF05198PhylomeDB:O82234PIR:B84632
PROSITE:PS00938Proteomes:UP000006548RefSeq:NP_179984.1scanprosite:PS00938
SMR:O82234STRING:3702.AT2G24060.1SUPFAM:0044019SUPFAM:SSF54364
SUPFAM:SSF55200TAIR:AT2G24060TIGRfam:TIGR00168TIGRFAMs:TIGR00168
UniGene:At.43835UniProt:O82234World-2DPAGE:0003:O82234
Coordinates (TAIR10) chr2:+:10229453..10231390
Molecular Weight (calculated) 35143.80 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.75
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGITSSTVG FNAVFTGITK TVSSHSLFSV DSKLCSLRLS KTELSFTNLT PSPRRAFAVT CRFGGGGGGY RFSGDNRRGR PKEAEIDEAL DISSIRSATV
101: RLIDGQQNML GLVSKDEAVR MADDAELDLV ILSPDADPPV VKMMDYSKYR YEQQKRKKDQ QKKTTRMDLK ELKMGYNIDQ HDYSVRLRAA QKFLQDGDKV
201: KVIVSMKGRE NEFRNIAIEL LRRFQTEIGE LATEESKNFR DRNMFIILVP NKEMIRKPQE PPTRKKKKTA ENEASASAAE ITAEPEPEPE PEPEPEPEPE
301: PEPEPEPLQI DS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)