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AT3G09210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plastid transcriptionally active 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plastid transcriptionally active 13 (PTAC13); FUNCTIONS IN: transcription elongation regulator activity; INVOLVED IN: positive regulation of RNA elongation from RNA polymerase II promoter; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Transcription antitermination protein, NusG, N-terminal (InterPro:IPR006645), Translation protein SH3-like, subgroup (InterPro:IPR014722), KOW (InterPro:IPR005824); Has 3797 Blast hits to 3795 proteins in 1334 species: Archae - 0; Bacteria - 2562; Metazoa - 0; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 1202 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IT03eggNOG:ENOG4112993EMBL:AY049246EMBL:AY129491
EMBL:CP002686EnsemblPlants:AT3G09210EnsemblPlants:AT3G09210.1entrez:820077
Gene3D:2.30.30.30Gene3D:3.30.70.940GeneID:820077GO:GO:0006355
GO:GO:0009295GO:GO:0009508Gramene:AT3G09210.1hmmpanther:PTHR30265
hmmpanther:PTHR30265:SF2IntAct:Q94AA3InterPro:IPR006645InterPro:IPR008991
InterPro:IPR014722KEGG:ath:AT3G09210MINT:MINT-8360711ncoils:Coil
OMA:INKPRPVPfam:PF02357PhylomeDB:Q94AA3Proteomes:UP000006548
RefSeq:NP_566346.1SMART:SM00738SMR:Q94AA3STRING:3702.AT3G09210.1
SUPFAM:SSF50104SUPFAM:SSF82679TAIR:AT3G09210tair10-symbols:PTAC13
UniGene:At.18646UniProt:Q94AA3
Coordinates (TAIR10) chr3:-:2825422..2826850
Molecular Weight (calculated) 37493.10 Da
IEP (calculated) 10.26
GRAVY (calculated) -0.52
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKLQGGLLQ WSRSSLIPSI YTPINKTQFS IAACVIERNH QLTAKERRQL RNERRESKLG YSWREEVEEK LIKKPKKRYA TWTEELNLDT LAESGPQWWA
101: VRVSRLRGHE TAQILARALA RQFPEMEFTV YAPSVQVKRK LKNGSISVKP KPVFPGCIFI RCILNKEIHD SIRDVDGVGG FIGSKVGNTK RQINKPRPVD
201: DSDLEAIFKQ AKEAQEKADS EFEEADRAEE EASILASQEL LALSNSDVIE TVAESKPKRA PRKATLATET KAKKKKLAAG STVRVLSGTF AEFVGNLKKL
301: NRKTAKATVG FTLFGKETLV EIDINELVPE IQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)