AT4G39040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding CRS1 / YhbY (CRM) domain protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7881 Blast hits to 5506 proteins in 1409 species: Archae - 38; Bacteria - 2320; Metazoa - 2599; Fungi - 454; Plants - 297; Viruses - 197; Other Eukaryotes - 1976 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18189249..18190535 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33272.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.98 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||||||||||
| Length | 296 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERVTASASC SSTHLIHNLL RHPKPPSPVC LFLRPFCFSA SVSQSNHRNK PRFQSFSSKP LPCHSASLVV KSFSSIDEPD LEEDEESEDE DFSAEEYEYE 101: DEEEEDEQDS GVVVSERGIE DSEASEEVSE IGDKEEKTEN TKKKKSRGSA LKLSIKEKKE LASYAHSLGD KLKCQLVGKS GVTDSVVFSF LETLEKNELL 201: KVKIRKTSPD ELEDAVQHLE EATGSVAVGQ IGRTVILYRP SPTKMKAEAK KKEVERMSIT RRQKYANTRP TKPFRREYSE RPDGRGRRGG SRVPTA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)