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AT5G11480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: barrier septum formation; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein, ribosome biogenesis, YsxC (InterPro:IPR019987); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G22870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0218eggNOG:KOG2486EMBL:AL163815EMBL:AY058138
EMBL:AY143920EMBL:CP002688EnsemblPlants:AT5G11480EnsemblPlants:AT5G11480.1
entrez:831019Gene3D:3.40.50.300GeneID:831019GO:GO:0000917
GO:GO:0005525GO:GO:0016787Gramene:AT5G11480.1HAMAP:MF_00321
hmmpanther:PTHR11649hmmpanther:PTHR11649:SF49InterPro:IPR006073InterPro:IPR019987
InterPro:IPR027417InterPro:IPR030393KEGG:ath:AT5G11480OMA:ELKQDWN
Pfam:PF01926Pfscan:PS51706PhylomeDB:Q9LYE2PIR:T48507
PROSITE:PS51706Proteomes:UP000006548RefSeq:NP_196709.1SMR:Q9LYE2
STRING:3702.AT5G11480.1SUPFAM:SSF52540TAIR:AT5G11480TIGRfam:TIGR03598
TIGRFAMs:TIGR03598UniGene:At.5130UniProt:Q9LYE2
Coordinates (TAIR10) chr5:-:3669350..3671471
Molecular Weight (calculated) 35662.90 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.26
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MILAHLPRFH LSILAKPSFS LSSSHFSFLN PKPSVTVSRT LFSFASKSNL ATVEPIPLSV SDSTDLDDAP VEIALDKLFI PPETDISGED SASLTTRILK
101: GSNIVLSKYA RDAQVVQADY VKSSVKTEDC PADGLPEFAL VGRSNVGKSS LLNSLVRRKR LALTSKKPGK TQCINHFRIN DKWYLVDLPG YGYASAPHEL
201: KQDWNKFTKD YFLNRSTLVS VFLLVDASIP VKPIDLEYAS WLGQNQVPMT LIFTKCDKRK KKKNGGKKPE ANIKEFQDLI QGFFETTPPW IMTSSVTNQG
301: RDEILLHMAQ LRNYWLKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)