AT2G43030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribosomal protein L3 family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribosomal protein L3 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Ribosomal protein L3, bacterial/organelle-type (InterPro:IPR019927), Ribosomal protein L3, conserved site (InterPro:IPR019926), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: ribosomal protein L3 plastid (TAIR:AT3G17465.1); Has 8745 Blast hits to 8744 proteins in 2878 species: Archae - 254; Bacteria - 5494; Metazoa - 134; Fungi - 132; Plants - 92; Viruses - 0; Other Eukaryotes - 2639 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17894898..17895713 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29365.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.17 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||
| Length | 271 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIAMAVVSF PSLLNKTTLS SSLFTPTFLP AKSSSLLIKS SPKTRFVVSS SMEAGIGVMG SKLGMMSFFE EDGTVVPVTV VGFREGNIVT QIKTLATDGY 101: DAVQIGYRRV RDKKLTKPET GHLQKAGTIP MRHLQEFRLT NIEGFEPNQK LVFDEIFKEG DLVDVAGTTI GKGFQGGIKR HHFKRGQMTH GSKSHRALGS 201: IGAGTTPGRV YKGKKMPGRM GGTRTKIRKL KIVKVDKELN VVMIKGALPG KPGNLLRITP AKIVGVNIPK N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)