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ATCG00180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30865669 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22616989 (2012): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : DNA-directed RNA polymerase family protein
Curator
Summary (TAIR10)
RNA polymerase beta' subunit-1
Computational
Description (TAIR10)
RPOC1; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: RNA elongation; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1).
Protein Annotations
BioCyc:ARA:ATCG00180-MONOMEREC:2.7.7.6eggNOG:COG0086eggNOG:ENOG410IGBV
EMBL:AP000423EnsemblPlants:ATCG00180EnsemblPlants:ATCG00180.1entrez:844784
GeneID:844784Genevisible:P56763GO:GO:0003677GO:GO:0003899
GO:GO:0006351GO:GO:0009507Gramene:ATCG00180.1HAMAP:MF_01323
hmmpanther:PTHR19376HOGENOM:HOG000054284IntAct:P56763InterPro:IPR000722
InterPro:IPR006592InterPro:IPR007066InterPro:IPR007080KEGG:00230+2.7.7.6
KEGG:00240+2.7.7.6KEGG:ath:ArthCp013KO:K03046MINT:MINT-8360653
OMA:HRMGYIKPaxDb:P56763Pfam:P56763Pfam:PF00623
Pfam:PF04983Pfam:PF04997PRIDE:P56763PRO:PR:P56763
ProteinModelPortal:P56763Proteomes:UP000006548RefSeq:NP_051050.1SMART:SM00663
SMR:P56763STRING:3702.ATCG00180.1SUPFAM:SSF64484TAIR:ATCG00180
tair10-symbols:RPOC1UniProt:P56763
Coordinates (TAIR10) chrC:-:20251..23084
Molecular Weight (calculated) 78587.30 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.29
Length 680 amino acids
Sequence (TAIR10)
(BLAST)
001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)