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AT5G36170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : high chlorophyll fluorescent 109
Curator
Summary (TAIR10)
Required for normal processing of polycistronic plastidial transcripts
Computational
Description (TAIR10)
high chlorophyll fluorescent 109 (HCF109); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, plastid organization, RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 2 (TAIR:AT1G56350.1); Has 17252 Blast hits to 17250 proteins in 2824 species: Archae - 5; Bacteria - 10710; Metazoa - 293; Fungi - 251; Plants - 224; Viruses - 14; Other Eukaryotes - 5755 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1186eggNOG:ENOG410IPQ8EMBL:AB018112EMBL:AJ298098
EMBL:AY056234EMBL:AY084711EMBL:AY117253EMBL:CP002688
EnsemblPlants:AT5G36170EnsemblPlants:AT5G36170.1EnsemblPlants:AT5G36170.2entrez:833614
ExpressionAtlas:Q9LVY0Gene3D:3.30.160.20GeneID:833614Genevisible:Q9LVY0
GO:GO:0006396GO:GO:0006415GO:GO:0009507GO:GO:0009570
GO:GO:0009657GO:GO:0016149GO:GO:0043022hmmpanther:PTHR11075
hmmpanther:PTHR11075:SF46HOGENOM:HOG000074814InParanoid:Q9LVY0InterPro:IPR000352
InterPro:IPR004374InterPro:IPR005139InterPro:IPR014720ncoils:Coil
OMA:FSGVEVMPaxDb:Q9LVY0Pfam:PF00472Pfam:PF03462
Pfam:Q9LVY0PhylomeDB:Q9LVY0PRIDE:Q9LVY0PRO:PR:Q9LVY0
PROSITE:PS00745ProteinModelPortal:Q9LVY0Proteomes:UP000006548RefSeq:NP_851096.1
RefSeq:NP_851097.1scanprosite:PS00745SMART:SM00937SMR:Q9LVY0
STRING:3702.AT5G36170.1SUPFAM:SSF75620TAIR:AT5G36170tair10-symbols:ATPRFB
tair10-symbols:HCF109TIGRfam:TIGR00020TIGRFAMs:TIGR00020UniGene:At.9505
UniProt:Q9LVY0
Coordinates (TAIR10) chr5:-:14236083..14237974
Molecular Weight (calculated) 50980.00 Da
IEP (calculated) 5.12
GRAVY (calculated) -0.36
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMELTVLGP LAGRSFAIAG KPKLLLLRPT NLPLLRLSLP LSLPNFSSSS RFNSPIVFAA QESNLSVSNE NETSEWLMQD FYTLRKDVEI ASARVEEIRA
101: SANLQQLEQE ITNLESKATD TSFWDDRTKA QETLSSLNDL KDRMRLLSEF KTMVEDAETI VKLTEEMDST DVSLLEEAMG IIKELNKSLD KFELTQLLSG
201: PYDKEGAVVY ITAGAGGTDA QDWADMLLRM YMRWGEKQRY KTKVVEMSNG EEAGIKSATL EIEGRYAYGY ISGEKGTHRI VRQSPFNSKG LRQTSFSGVE
301: VMPLLPEEAV GIEIPEEDLD ISFTRAGGKG GQNVNKVETA VRITHIPTGV AVRCTEERSQ LANKTRALIR LKAKLMVIAE EQRATEIKEI RGDAVKAEWG
401: QQIRNYVFHP YKLVKDVRTG HETSDITSVM DGDLDPFIKA YLKHKYTLAM ASAVTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)