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AT3G14110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift.
Computational
Description (TAIR10)
FLUORESCENT IN BLUE LIGHT (FLU); FUNCTIONS IN: binding; INVOLVED IN: chlorophyll biosynthetic process, oxylipin biosynthetic process, response to singlet oxygen; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); Has 863 Blast hits to 502 proteins in 124 species: Archae - 8; Bacteria - 276; Metazoa - 453; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
BioGrid:5962eggNOG:ENOG410IEEHeggNOG:ENOG4111KCWEMBL:AF446890
EMBL:AK317782EMBL:AP000600EMBL:AY052677EMBL:AY087529
EMBL:CP002686EnsemblPlants:AT3G14110EnsemblPlants:AT3G14110.1entrez:820628
ExpressionAtlas:Q940U6Gene3D:1.25.40.10GeneID:820628Genevisible:Q940U6
GO:GO:0009535GO:GO:0016021GO:GO:0031969hmmpanther:PTHR10098
hmmpanther:PTHR10098:SF117HOGENOM:HOG000239198InParanoid:Q940U6IntAct:Q940U6
InterPro:IPR011990InterPro:IPR013026MINT:MINT-8300912ncoils:Coil
PaxDb:Q940U6PDB:4YVOPDB:4YVQPDB:5CHE
PDBsum:4YVOPDBsum:4YVQPDBsum:5CHEPfam:PF13424
Pfam:Q940U6Pfscan:PS50293PhylomeDB:Q940U6PRIDE:Q940U6
PRO:PR:Q940U6PROSITE:PS50293ProteinModelPortal:Q940U6Proteomes:UP000006548
RefSeq:NP_566478.1SMR:Q940U6STRING:3702.AT3G14110.3SUPFAM:SSF48452
TAIR:AT3G14110tair10-symbols:FLUTMHMM:TMhelixUniGene:At.22594
UniGene:At.70203UniProt:Q940U6
Coordinates (TAIR10) chr3:-:4676222..4677602
Molecular Weight (calculated) 34588.80 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.31
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALIRCCSS FSHTSGGQPP PRDKSRAPEI GKFATSIGYS VVRKPGDHPP FSKIIHSSSQ PKERQGKGIL QTPFASVGSL DKFSAFEGIG RLKLPVMAVL
101: LTNSLQMATP LEALAAEICE PESSMFSMPI LLLVALIGAT VGGLLARQRK GELQRLNEQL RQINAALRRQ AKIESYAPSL SYAPVGARIP DSEIIVEPKK
201: QELISKLKTG KTFLRNQEPE KAYTEFKIAL ELAQSLKDPT EEKKAARGLG ASLQRQGKYR EAIQYHSMVL AISKRESEDS GITEAYGAIA DCYTELGDLE
301: KAGKFYDTYI ARLETD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)