AT5G20170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA polymerase II transcription mediators | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA polymerase II transcription mediators; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med17 (InterPro:IPR019313); Has 84 Blast hits to 82 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 6; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6807554..6810729 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73408.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.32 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||
| Length | 653 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSDMEISLD RLPIKRLESI EENGAERFPS DVDYDDKRVS LIRRIDFAWA LEEEDELKKK KQKKSSKDSV EQWKWKGMVE NLQLAHQELT VIIDLIDTVQ 101: ANDAVTVAGM TRPKPMPNEI LSDLAVSTAT KLQGYRNLGN YFKQSAKALE QKINREARFY GALIRLQRNW KVKRQRMLAS NASNEGFTID LSDSSLYDPT 201: SGFRPSTLST IRVDHDSAGM LAINVPQDSW YSLRFGYVGL NPIGNSNESD EHIDSTTGHD IPGTSEKLSA SDDKYVKETH SLLREVHKSI FAEQLFDMLN 301: REAFNEGVGF NISGLRENFM EMSIGQGASL FVSLHPSGKN PSIKKSESAT LLIESSGRVE PAEGGDYRLK KLGFPNRTSY EIYLQQIFHE HAFGKAKDQL 401: KSKSIRASNQ TEKDSNSGLL DHFCLSLTHR IFSNRVLVHL ESVVCKVPYL HLISHPTWNS RTSSWTVFMT VPPSIIPQGR SETQSPDGKR NLKTQFRTKV 501: VVKDDCISVE AECTPNVVGL LKSSSCNLFS INKYECDVAD LPVMILQQVA SQIVCWLLEE ARTVGTKASR EFLSLSLEIV EGERVSLVAH VNPEDAKGCI 601: SWWLVMENGC TEEREGVSES RKLLGHLSLD VLYSVLMDLI NLCGTGRNAL ERL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)