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AT5G16260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay.
Computational
Description (TAIR10)
EARLY FLOWERING 9 (ELF9); FUNCTIONS IN: mRNA binding, RNA binding; INVOLVED IN: negative regulation of flower development, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), GYF (InterPro:IPR003169); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YD7PeggNOG:KOG1548EMBL:AK229192EMBL:AL391148
EMBL:BT022024EMBL:CP002688EnsemblPlants:AT5G16260EnsemblPlants:AT5G16260.1
entrez:831486Gene3D:3.30.70.330GeneID:831486GO:GO:0000166
GO:GO:0000184GO:GO:0000398GO:GO:0003729GO:GO:0005634
GO:GO:0005684GO:GO:0005686GO:GO:0005829GO:GO:0009910
Gramene:AT5G16260.1hmmpanther:PTHR15608HOGENOM:HOG000240892InterPro:IPR000504
InterPro:IPR003169InterPro:IPR012677InterPro:IPR025640KEGG:ath:AT5G16260
KO:K13093ncoils:CoilOMA:FEKWQREPfam:PF00076
Pfam:PF14237Pfscan:PS50102PhylomeDB:Q9LF02PIR:T51496
PRO:PR:Q9LF02PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_197130.1
SMART:SM00360SMR:Q9LF02STRING:3702.AT5G16260.1SUPFAM:SSF54928
SUPFAM:SSF55277TAIR:AT5G16260tair10-symbols:ELF9UniGene:At.10000
UniProt:Q9LF02
Coordinates (TAIR10) chr5:+:5311363..5315496
Molecular Weight (calculated) 57896.30 Da
IEP (calculated) 4.47
GRAVY (calculated) -0.75
Length 519 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDSDNLQLP PSSTGATVAA TDVGWYILGE NQQNLGPYTF SELCNHFRNG YLLETTLVWA DGRSEWQPLS AIPDLMSRIS GAEIAYPAVG SSGLINGSNA
101: GTRQEKQDYT ASASTEDEFE KWQREIKDAE AEAERLKNGS VSGTELVEDD HERASSPPEG EDEFTDDDGT KYKWDRARRV WVPQDDPPLG SVDPYGLEEM
201: TFAKEDEVFP TINILDTSVD KKDASKDDVA GKKEEDGSDE TAEINSNGKR KLPEPETEKK EPNKPPDSWF ELKVNPHIYV NGLPDDVTIE EVAEVFSKCG
301: IIKEDDTGKP RIKLYSDKAT GKLKGDALIS YMKEPSVDLA IKILDGAPLR PADKLLMSVS RAKFEQKGER FITKQTDNKK KKKLKKVEQK LLGWGGTDDS
401: KVSIPATVVL RYMFSPAELM ADEDLVAELE EDVKEESLKH GPFDSVKVCE HHPQGVVLVR FKDRRDAQKC IEAMNGRWYA KRQIHASLDD GSVNHATVRD
501: FDLEAERLDQ FAAELEAAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)