AT1G04230.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF2361) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF2361); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2361 (InterPro:IPR019310); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2361) (TAIR:AT5G43720.1); Has 1174 Blast hits to 818 proteins in 194 species: Archae - 0; Bacteria - 26; Metazoa - 566; Fungi - 310; Plants - 87; Viruses - 6; Other Eukaryotes - 179 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:1125576..1127828 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 37151.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 11.01 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.15 | ||||||||||||||||||||||||
| Length | 325 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAHGGYARRR VAERKTTAGT SRRSKGLRVE KKPKNSSLKN QIRSIGRMIR KDLPPEVREA LEKKLDDLKK QQDIHFRLAF ERKIFLRNRK VRFFERRKIE 101: RSIRRLEKLH RSTSGGYVQD AEIGGQLNRL KEDLEYVRFF PKNEKYVSLF SGSDDLQVSE RRSKLRKQIK ANIIFAAASG KELEETGSED DALLDLSDDD 201: FFVNGSSSDE ADADDEWTDK STKEPVSSAS GRATSSMSSD ERNQKPYSTR VLMPPPRSRF ASTSRQYSSV KRNEIPSSSN TSHRRSQSSH AATSSHTSQS 301: SNLSSNSDAH KPKRKRRPKK KKLQA |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)