AT5G13560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4361579..4366318 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 76655.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.74 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||
| Length | 679 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSWLRTAVNK AVEVGNRKNI TRTVKNYADS VVQHAGQAVA EGAKLFQDRI GVGAYKSVHQ TIQRLEEAAV SYRGQERALL ITRWLSVLKE IDRATDSSLK 101: DKQLSSEEQL ASDEAKKREW VLYYDPDIGG EPLNFRDVFL QSQALEGIVL SMIIEPPHDE EITLLLEMFG LCLNGGKEVH DAIVSSMQDL ATVFSSYKDE 201: VLVKQDELLQ FAQNAITGLK INAEMLRIDA EASDLRKKLE KMNASQIPQE SEDKEHKETP LTIEAFKETL AKIRLCSRLE GLLIRKRQLS NGDSPDIHAQ 301: KVDKLRVLLE SLANSTSKAE KRISENRLQK EEALKARVVK ANETGEKEKE LGAEIAQLEK QRDELEADLK RVNLSLAAAQ ARFRNATEER DQFGEANNQI 401: IAHLKTKDDD LSKSVVACKK EAEVIKTWIN FLEDTWLLQC SHIETKDKQT LDELEKHEDY FSDVALNILS VYKKEVAPLI SRIENYVENL KNLGPGSEKP 501: PNADQGDNQV SNPRKILEEE YIDYETKIIT TFSIVDNVKE QFQVLQSKLD KKDDRRVKEL FDDMEKMRQQ FESIARPTLE IEIPSPRSSV TSPKSSATSP 601: KSPKPSSSSM NASTESTQTQ KPELSNSPQA PNPAAGSSQE FNPEAELAEL ESEFGKVARD YSADEVDGWE FDELEKELQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)