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AT5G10940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G45620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XWAReggNOG:KOG1310EMBL:AY039964EMBL:AY150424
EMBL:CP002688EnsemblPlants:AT5G10940EnsemblPlants:AT5G10940.1entrez:830961
ExpressionAtlas:Q94BQ3Gene3D:1.25.40.10Gene3D:2.130.10.10GeneID:830961
GO:GO:0005634GO:GO:0005829GO:GO:0005886GO:GO:0009506
GO:GO:0080008Gramene:AT5G10940.1hmmpanther:PTHR15574hmmpanther:PTHR15574:SF40
HOGENOM:HOG000239804IntAct:Q94BQ3InterPro:IPR001680InterPro:IPR011990
InterPro:IPR015943InterPro:IPR017986ncoils:CoilOMA:IRDCNSA
Pfam:PF00400Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q94BQ3
PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_568242.1
SMART:SM00320SMR:Q94BQ3STRING:3702.AT5G10940.1SUPFAM:SSF48452
SUPFAM:SSF50978TAIR:AT5G10940UniGene:At.22156UniProt:Q94BQ3
Coordinates (TAIR10) chr5:-:3448890..3454127
Molecular Weight (calculated) 83834.70 Da
IEP (calculated) 5.72
GRAVY (calculated) -0.55
Length 757 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNLSFHDGN IFNLLHTRSQ DPSHEVDQRM QFHSSLVRRL SQEQELEGHQ GCVNALAWNS NGSLLISGSD DLRINIWNYS SRKLLHSIDT GHTANIFCTK
101: FVPETSDELV VSGAGDAEVR LFNTSRLSGR AEDDNAIIPS ALYQCHTRRV KKLAVEPGNP NVVWSASEDG TLRQHDFRES TSCPPAGTAH QECRSVLLDL
201: RSGAKRALAD PPKQTLSLKS CDISATRPHL LLVGGSDAFA RLYDRRMLPP LASSRKRMPP PPCVNYFCPM HLSERGRTNL HLTHVTFSPN GEEVLLSYSG
301: EHVYLMNVNN GICSTGIMQY TPGDVDNLFS FSNNLHDVES PPQVSTTPQN GFHRSSNAAT VKKCTELVEI AKWSLEEGTD VFYAIEAANE VLDAHSNDIE
401: SALRHECLCT RAALLLKRKW KNDAHMAVRD CHNARRIDAS SFKAHYYMSE ALQQLGKCKE ALDFATAAQH MNPSDADIVA KVESIKRDLQ AAGAEKNEET
501: GAGTTRVLSL SDILYRSEAN SDSSHDMSRS EREDSDYDEE LELDIQTSLS DDEGRDTDSN SMRGSLNLRI HRVGDDKPME NTVDNASSGT ASSSQNDRTS
601: YQPEGAIDMK RRYVGHCNVG TDIKQASFLG QRGEYIASGS DDGRWFIWEK QTGRLMKVLV GDESVLNCIQ CHPFDSVVAT SGIDNTIKIW SPTASVPSIV
701: AGGSAGPATA NVVEVMESNQ QKLSRNRENP LSVELMQRFR MQEFAEGNFH PFECTQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)