AT5G10940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G45620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3448890..3454127 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83834.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.72 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 757 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDNLSFHDGN IFNLLHTRSQ DPSHEVDQRM QFHSSLVRRL SQEQELEGHQ GCVNALAWNS NGSLLISGSD DLRINIWNYS SRKLLHSIDT GHTANIFCTK 101: FVPETSDELV VSGAGDAEVR LFNTSRLSGR AEDDNAIIPS ALYQCHTRRV KKLAVEPGNP NVVWSASEDG TLRQHDFRES TSCPPAGTAH QECRSVLLDL 201: RSGAKRALAD PPKQTLSLKS CDISATRPHL LLVGGSDAFA RLYDRRMLPP LASSRKRMPP PPCVNYFCPM HLSERGRTNL HLTHVTFSPN GEEVLLSYSG 301: EHVYLMNVNN GICSTGIMQY TPGDVDNLFS FSNNLHDVES PPQVSTTPQN GFHRSSNAAT VKKCTELVEI AKWSLEEGTD VFYAIEAANE VLDAHSNDIE 401: SALRHECLCT RAALLLKRKW KNDAHMAVRD CHNARRIDAS SFKAHYYMSE ALQQLGKCKE ALDFATAAQH MNPSDADIVA KVESIKRDLQ AAGAEKNEET 501: GAGTTRVLSL SDILYRSEAN SDSSHDMSRS EREDSDYDEE LELDIQTSLS DDEGRDTDSN SMRGSLNLRI HRVGDDKPME NTVDNASSGT ASSSQNDRTS 601: YQPEGAIDMK RRYVGHCNVG TDIKQASFLG QRGEYIASGS DDGRWFIWEK QTGRLMKVLV GDESVLNCIQ CHPFDSVVAT SGIDNTIKIW SPTASVPSIV 701: AGGSAGPATA NVVEVMESNQ QKLSRNRENP LSVELMQRFR MQEFAEGNFH PFECTQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)