AT5G55100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147), SWAP/Surp (InterPro:IPR000061); Has 37493 Blast hits to 21004 proteins in 1134 species: Archae - 58; Bacteria - 2223; Metazoa - 18747; Fungi - 3374; Plants - 2679; Viruses - 122; Other Eukaryotes - 10290 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22361281..22364664 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94776.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.14 | ||||||||||||||||||||||||||||||||
| Length | 843 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLEIVGRHA LFFDDDSMAT FVNSPTALVD WNSLFIDRYD VRHLLSSPPP PRIKRRRPNS NDADLESELD HERYLDLPSE SPSPSDDDEH DMNEDSANTN 101: ADGYRAVSFS YGSSSDVNDQ KNAADMESGF HPPFPVPDYL RQNLPPTEKL HQIITRTSSF VSKHGGQSEI VLRVKQGDNP TFGFLMPDHH LHLYFRFLVD 201: HQELLTGKSS VEEKKNESEK DGGALSLLGS VYGTVEDEDA NEESANDSKT SESAKGDDGV KVTDSNGPEG SKGAAKIASK HSLPLNDHAS FIKRNPSVSA 301: VNVVEKKQIN TEKLVTSDKS QPKLELQIVE PTTEMKRVID KIVDFIQKNG KELEATLVAQ DVKYGMFPFL RPSSLYHAYY RKVLQEAEEL KSGDKGVIIR 401: KEDVKQEKMG NAVKDSKHGF GSVLPDDSAK KEKLKMVSDK PKVELHNEPF KPVQPQMRVN VDANTAAAIL QAARRGIRNP QLGILTGKPM DETSQTLGND 501: VSYPSSKSPD LAKSTGQSLS GSTAASEADS SEAGLSKEQK LKAERLKRAK MFVAKLKPDA QPVQQAEPSR SISVEPLDSG ISGLGAKAAK ERDSSSIPYV 601: AESKLADDGN SERRSKRNYR SRSQRDEDGK MEQGEEEESS MDEVTEETKT DKKHSCSRKR HKHKTRYSSK DRHSRDKHKH ESSSDDEYHS RSRHRHRHSK 701: SSDRHELYDS SDNEGEHRHR SSKHSKDVDY SKDKRSHHHR SRKHEKHRDS SDDEHHHHRH RSSRRKHEDS SDVEHGHRHK SSKRIKKDEK TVEEETVSKS 801: DQSDLKASPG DNIPYLQNEP SQVSDELRAK IRAMLADTLG DGR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)