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AT3G18100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 4r1
Curator
Summary (TAIR10)
Member of the R2R3 transcription factor gene family.
Computational
Description (TAIR10)
myb domain protein 4r1 (MYB4R1); CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.2); Has 22862 Blast hits to 8555 proteins in 571 species: Archae - 0; Bacteria - 1576; Metazoa - 2254; Fungi - 1468; Plants - 12920; Viruses - 9; Other Eukaryotes - 4635 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB020749EMBL:AY033827
EMBL:CP002686EnsemblPlants:AT3G18100EnsemblPlants:AT3G18100.1entrez:821335
ExpressionAtlas:Q9LV31Gene3D:1.10.10.60GeneID:821335GO:GO:0003677
GO:GO:0003700GO:GO:0006355Gramene:AT3G18100.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF538InterPro:IPR001005InterPro:IPR009057InterPro:IPR017877
InterPro:IPR017930OMA:ADSMANAPfam:PF00249Pfscan:PS50090
Pfscan:PS51294PhylomeDB:Q9LV31PROSITE:PS50090PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_566597.1SMART:SM00717SMR:Q9LV31
STRING:3702.AT3G18100.1SUPFAM:SSF46689TAIR:AT3G18100tair10-symbols:AtMYB4R1
tair10-symbols:MYB4R1UniGene:At.6052UniProt:Q9LV31
Coordinates (TAIR10) chr3:+:6200689..6204583
Molecular Weight (calculated) 96089.30 Da
IEP (calculated) 5.58
GRAVY (calculated) -0.94
Length 847 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRNSLYEAD DDDDDDEEDD IGEDLEDLRR ACMVSDVNSD QFASKTGSIE PEGVGGGEIP SDSENEDDFE MLRTIKSQLA SSKDAGRSSG PPMGLSLLSD
101: SESEDDFEMI RSIKSQLSLS MDVSLPPIGL SDDEEDDAFE TLRAIRRRFS AYKNFDSEGK FMNDSHGKKK QVHNSDNEPS SEILSRSNTC ESFPDHGKSV
201: VTVPDSEDVQ DGHMPAASSS FPEAARAFVD AIRRNRAYQK FLRGKLAEIE ATIEQNEKHK KNVRIVKDFQ ASCKRITKLA LCQRKDPRVE LISTRKSGPC
301: DSSEVIGPCD SFEGNDKKIS PLTLGPAENP CVENYRMALE KYPISVKRRK WSTEENKNLA KGLKQEVQKI LLSEAIERSS DLEGATYDID TINESIGNLE
401: ITPEMIRQFL PKINWDSLDI KDRSAAECEA RWMSSEDPLI NHGPWTAAED KNLLRTIEQT SLTDWVDIAV SLGTNRTPFQ CLARYQRSLN PSILKKEWTA
501: EEDDQLRTAV ELFGEKDWQS VANVLKGRTG TQCSNRWKKS LRPTRKGTWS LEEDKRVKVA VTLFGSQNWH KISQFVPGRT QTQCRERWLN CLDPKVNRGK
601: WTEEEDEKLR EAIAEHGYSW SKVATNLSCR TDNQCLRRWK RLYPHQVALL QEARRLQKEA SVGNFVDRES ERPALVTSPI LALPDISLEP EPDSVALKKK
701: RKAKQKKSDA ERQPKRRRKG LKNCSGDVCR QENETVCENE PNNGGEERML ALECHDEIQD NAKEKPKQRR KSVAETVCEN EPNNGGEERM LALECDNEIQ
801: DNAKEKRKRR RKSVAETSNN TTGLKKLTPR RRKISAVVPI KNQDAPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)