suba logo
AT5G59980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polymerase/histidinol phosphatase-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polymerase/histidinol phosphatase-like; FUNCTIONS IN: tRNA-intron endonuclease activity, ribonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738); Has 397 Blast hits to 397 proteins in 185 species: Archae - 13; Bacteria - 5; Metazoa - 139; Fungi - 139; Plants - 45; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1603eggNOG:KOG2363EMBL:CP002688EnsemblPlants:AT5G59980
EnsemblPlants:AT5G59980.1entrez:836120ExpressionAtlas:F4JXF1GeneID:836120
GO:GO:0004540GO:GO:0008033Gramene:AT5G59980.1hmmpanther:PTHR13031
InterPro:IPR002738InterPro:IPR016195PANTHER:PTHR13031PaxDb:F4JXF1
Pfam:PF01876PRIDE:F4JXF1ProteinModelPortal:F4JXF1Proteomes:UP000006548
RefSeq:NP_200806.2STRING:3702.AT5G59980.2SUPFAM:SSF89550TAIR:AT5G59980
UniGene:At.29195UniProt:F4JXF1
Coordinates (TAIR10) chr5:+:24147207..24149392
Molecular Weight (calculated) 64082.20 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.39
Length 581 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFFDLSIPY NEPPRSGGKE IAGGKTLRLK LATKAMELGY VGIAHNRSIK GVMSDKDSCT IPLLTLGSLI KVAPRLASSV GFHRDLLGVP RTTPFRQYTR
101: LTVHVESNAQ CQSLNSGNPI LKSYDIIAVR PMNQNAFDYA CEKAEVDLIS IDFTDKMLFR LKHPMVKAAI QRGIYFEIKY SDILMDAQTR RQVISNAKLL
201: VDWTRGKNLI ISSGAPSVTE LRGPNDVINL MFLLGLSAER ARAAISKNCR NMIAKVLKKK RFHKEAVRVE LLSAGDTFSL EQPLSEDCMK WDRLSSGEGD
301: MLLDDLAKAF DATNVVAHKS SKAIDFTSVL DGLPKHGFRV KDIVGTESVT QPSAAKVIDT QVHSSNQVSE LRMATASSDD NLREIETISQ IDMLMSEDDN
401: KVEPTTNVLK EEAFALRKCS ASHGQGILVQ NQTATPFTLT RCTKSEAASD VSMNIESTSE GGSMSPSKSD HGIPQSPVEV NNMGNAAFEE EASVDENSKE
501: RATTGHASND EMHITESGHH ASIDDEKHIP EPEHLTSIAD EMKIDCSSEA NHDEYMEVTM EDQMHETVQM RLCKTMTKHQ D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)