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AT4G23540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Domain of unknown function, NUC173 (InterPro:IPR012978); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G34357.1); Has 378 Blast hits to 366 proteins in 171 species: Archae - 0; Bacteria - 6; Metazoa - 125; Fungi - 137; Plants - 63; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ3DeggNOG:KOG1248EMBL:CP002687EnsemblPlants:AT4G23540
EnsemblPlants:AT4G23540.1entrez:828454Gene3D:1.25.10.10GeneID:828454
Gramene:AT4G23540.1hmmpanther:PTHR21576hmmpanther:PTHR21576:SF19InParanoid:F4JNL5
InterPro:IPR011989InterPro:IPR012978InterPro:IPR016024iPTMnet:F4JNL5
KEGG:ath:AT4G23540KO:K14794OMA:TCSNTWLPaxDb:F4JNL5
Pfam:PF08161PRIDE:F4JNL5ProteinModelPortal:F4JNL5Proteomes:UP000006548
RefSeq:NP_194085.4STRING:3702.AT4G23540.1SUPFAM:SSF48371TAIR:AT4G23540
UniGene:At.47961UniGene:At.48897UniProt:F4JNL5
Coordinates (TAIR10) chr4:-:12280547..12286420
Molecular Weight (calculated) 123484.00 Da
IEP (calculated) 7.42
GRAVY (calculated) -0.14
Length 1131 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAAFEDRADE NDEIAFKDGN TDISQQLMDR YGKSSAAQHR HLVATAVAMR SILTSESLPP SPSAFFAAAI SSVDSSTEDP VAVSALLTFL SIVVPLVPSG
0101: EISATMARDA VAVLVKPIEE EGTKLGVASL RAGVKCIGTL LIGFCDLNDW ESLQIGFALL LKFAIDKRPK VRRCAQECLE KLFGSLRSST VIKEASNTVY
0201: ALLKEYKPVL SDLSSTKIEE GSKVDSTLKS ENAEAAHVLN VLSATIPFLS AKVSSRVFSE LCGLMASQFS PLTRQILKGI DTIFKNSEDK IVVPEIEGLV
0301: TTLTSYLSLH DKNPADTIVH VTTLLKDALE KAYSVEPTLC LSKLPLVCSS LAGLLTSTDD IASKASTILK DLISSHIDKK KLLTEGSLSN QDEDNVTSGD
0401: NINAARCVCS VFESVLNSCD GIPNEHILTV INLLIEKLGE LSYILAKNII LKLADLMKNA IGDTSSSQDL QQCIGSAVVA MGPVRLLTLL PITLHAESHS
0501: CTNAWLIPIL RKYIIGASLA YYVDNIVPLA KSLMLASKGA KKSTHGKELR ACGHELLRLL PAFCNYPVDV ANKFGSLAKL MVKFIKKKSF MHEAVALSLQ
0601: MLVNQNKGMP KPSTDMGEAK AISEEDATTE LERGFHYSKK ASTKNMKALA SSSTELLQTL VDVFTVSGTE ISADFKAAIG CLASTLDSSV RKKILISLLN
0701: KFDPAGESET EGQVNQSNDS VDEEKENCSS TKTQLKRSAV LDLASSFVEG AKEDLIELIY NLVRQSFQAT DEADLYGAYD TLSRVLQEHG WFCASHFAEV
0801: IEMLLSHKTP EDAASSRSRF ACLHVLMAHG IQSSTEEENE KAFLILNEMI LTLKEGKEEH RKAACDTLVM VYTTLKNSSS ITSDELCPKL INMITGYISG
0901: TSPHIRSGAV SALSALVYKD PEICLSSPEL LSSVLSLLHT KSIEIIKAVL GFVKVLVSTS QAQDLHSLLQ NLLYEILPWS SVSRHYFKSK VTIIVEIMVR
1001: KCGTRAVQLA TPDKHKSFIE TVLENRSGKS KDKEETNESQ TTSIDPSRGP RKRNYREASS ETTAKQDGNK FKRQKRTYQQ HTPASDINQS RTGPQRPGNR
1101: SFGKQREASG NNHKSGKETR KPQKNRFRKA T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)