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AT1G10270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutamine-rich protein 23
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glutamine-rich protein 23 (GRP23); FUNCTIONS IN: binding; INVOLVED IN: embryo development, cell division; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G49240.1); Has 43483 Blast hits to 18975 proteins in 889 species: Archae - 27; Bacteria - 1738; Metazoa - 7010; Fungi - 2820; Plants - 24944; Viruses - 157; Other Eukaryotes - 6787 (source: NCBI BLink).
Protein Annotations
BioGrid:22806eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC005489
EMBL:CP002684EnsemblPlants:AT1G10270EnsemblPlants:AT1G10270.1entrez:837566
Gene3D:1.25.40.10GeneID:837566Genevisible:Q9SY69GO:GO:0005634
GO:GO:0005739GO:GO:0006351GO:GO:0006355GO:GO:0009793
GO:GO:0051301Gramene:AT1G10270.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF393
HOGENOM:HOG000070505InParanoid:Q9SY69IntAct:Q9SY69InterPro:IPR002885
InterPro:IPR011990InterPro:IPR019734KEGG:ath:AT1G10270ncoils:Coil
OMA:QQPWANQPaxDb:Q9SY69Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:Q9SY69Pfscan:PS51375PhylomeDB:Q9SY69
PIR:A86237PRIDE:Q9SY69PRO:PR:Q9SY69PROSITE:PS51375
ProteinModelPortal:Q9SY69Proteomes:UP000006548RefSeq:NP_172498.1SMART:SM00028
SMR:Q9SY69STRING:3702.AT1G10270.1SUPFAM:SSF48452SUPFAM:SSF81901
TAIR:AT1G10270tair10-symbols:GRP23TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.24665UniProt:Q9SY69
Coordinates (TAIR10) chr1:+:3363535..3366276
Molecular Weight (calculated) 102099.00 Da
IEP (calculated) 7.67
GRAVY (calculated) -0.78
Length 913 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)