suba logo
AT2G15400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : DNA-directed RNA polymerase family protein
Curator
Summary (TAIR10)
Non-catalytic subunit of Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, At2g15430 can substitute for At2g15400 in the context of Pol V and encodes the equivalent subunit of Pol II and Pol IV.
Computational
Description (TAIR10)
NRPE3B; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT2G15430.1); Has 1357 Blast hits to 1356 proteins in 354 species: Archae - 243; Bacteria - 1; Metazoa - 278; Fungi - 347; Plants - 109; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).
Protein Annotations
BioGrid:1391eggNOG:COG0202eggNOG:KOG1522EMBL:AC006920
EMBL:BT005715EMBL:BT006072EMBL:CP002685EMBL:L34771
EnsemblPlants:AT2G15400EnsemblPlants:AT2G15400.1entrez:816032ExpressionAtlas:Q39212
Gene3D:2.170.120.12GeneID:816032Genevisible:Q39212GO:GO:0000418
GO:GO:0000419GO:GO:0003677GO:GO:0003899GO:GO:0006366
hmmpanther:PTHR11800hmmpanther:PTHR11800:SF2HOGENOM:HOG000230844InParanoid:Q39212
IntAct:Q39212InterPro:IPR001514InterPro:IPR009025InterPro:IPR011262
InterPro:IPR011263KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6OMA:NGVRRAM
PaxDb:Q39212Pfam:PF01000Pfam:PF01193Pfam:Q39212
PhylomeDB:Q39212PIR:E84528PIR:S71177PRIDE:Q39212
PRO:PR:Q39212PROSITE:PS00446ProteinModelPortal:Q39212Proteomes:UP000006548
Reactome:R-ATH-112382Reactome:R-ATH-113418Reactome:R-ATH-674695Reactome:R-ATH-6781823
Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-72086Reactome:R-ATH-72163
Reactome:R-ATH-72165Reactome:R-ATH-72203Reactome:R-ATH-73776Reactome:R-ATH-73779
Reactome:R-ATH-75953Reactome:R-ATH-76042Reactome:R-ATH-77075RefSeq:NP_179142.1
scanprosite:PS00446SMART:SM00662SMR:Q39212STRING:3702.AT2G15400.1
SUPFAM:SSF55257SUPFAM:SSF56553TAIR:AT2G15400tair10-symbols:NRPE3B
tair10-symbols:RBP36BUniGene:At.40419UniProt:Q0WRA4UniProt:Q39212
Coordinates (TAIR10) chr2:+:6713022..6714386
Molecular Weight (calculated) 35577.40 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.27
Length 319 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGVTYQRFP TVKIRELKDD YAKFELRETD VSMANALRRV MISEVPTMAI HLVKIEVNSS VLNDEFIAQR LSLIPLTSER AMSMRFCQDC EDCNGDEHCE
101: FCSVEFPLSA KCVTDQTLDV TSRDLYSADP TVTPVDFTSN SSTSDSSEHK GIIIAKLRRG QELKLKALAR KGIGKDHAKW SPAATVTYMY EPDIIINEEM
201: MNTLTDEEKI DLIESSPTKV FGIDPVTGQV VVVDPEAYTY DEEVIKKAEA MGKPGLIEIH PKHDSFVFTV ESTGALKASQ LVLNAIDILK QKLDAIRLSD
301: NTVEADDQFG ELGAHMREG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)