AT1G10320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor small subunit, putative (TAIR:AT1G27650.1); Has 103377 Blast hits to 43645 proteins in 2110 species: Archae - 258; Bacteria - 11294; Metazoa - 44927; Fungi - 9113; Plants - 5313; Viruses - 581; Other Eukaryotes - 31891 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3384164..3388373 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89069.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.90 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 757 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW 101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHESS NAEFVLQISD 201: RPTSNPLPPG SEASANYQNV SSAQQILESV AQEVPNFGTE QDKAHCPFHL KTGACRFGQR CSRVHFYPNK SCTLLMKNMY NGPGITWEQD EGLEYTDEEA 301: ELCYEEFYED VHTEFLKYGE LVNFKVCRNG SFHLKGNVYV HYRSLESAIL AYQSINGRYF AGKQVNCEFV NISRWKVAIC GEYMKSRLKT CSRGSACNFI 401: HCFRNPGGDY EWADHDRPPP RFWIHKMTSL FGYSDEKHME HESSGSLNDS ISDLSTDSHR QPSRRSRSRD HDHANVGSTP SYRSRKYHGD TQDSTREDKL 501: RRHAENCHDG DDSPSRDGSL EREMYKERRY AKDTLHRDSR WSEHSPGHRV GRKRIHGRYS DDDSADGDDY GRRGTGHKRK PRRGTDSGVQ EQMDNEKDRK 601: THRSSRKHSR EGSSADKEEG HEHDRVHTVS DKSHRERSKH RHERSSSRYS HEEDSTESRH HQHKESDKKR SVETSPVGYQ SDKDRDRSKQ RQRYKSDDPE 701: SDQSRKGKRQ SEENSDRETH KERRHRHRKR RRTQNSDDQN PKESEEVEEE IERWRPV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)