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AT3G28030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 5'-3' exonuclease family protein
Curator
Summary (TAIR10)
Required for repair of pyrimidine-pyrimidinone (6-4) dimers.
Computational
Description (TAIR10)
ULTRAVIOLET HYPERSENSITIVE 3 (UVH3); FUNCTIONS IN: protein binding, nuclease activity; INVOLVED IN: DNA repair, response to UV-B, response to heat, non-photoreactive DNA repair; LOCATED IN: nucleus; EXPRESSED IN: stem, leaf whorl, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), Xeroderma pigmentosum group G protein (InterPro:IPR001044), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G01880.1); Has 8115 Blast hits to 5779 proteins in 624 species: Archae - 528; Bacteria - 414; Metazoa - 2441; Fungi - 1496; Plants - 576; Viruses - 71; Other Eukaryotes - 2589 (source: NCBI BLink).
Protein Annotations
BioGrid:7757EC:3.1.-.-eggNOG:COG0258eggNOG:KOG2520
EMBL:AB028616EMBL:AF312711EMBL:CP002686EnsemblPlants:AT3G28030
EnsemblPlants:AT3G28030.1entrez:822427Gene3D:3.40.50.1010GeneID:822427
Genevisible:Q9ATY5GO:GO:0003697GO:GO:0004519GO:GO:0005634
GO:GO:0006289GO:GO:0009408GO:GO:0010213GO:GO:0046872
Gramene:AT3G28030.1hmmpanther:PTHR11081hmmpanther:PTHR11081:SF1HOGENOM:HOG000083663
InParanoid:Q9ATY5IntAct:Q9ATY5InterPro:IPR001044InterPro:IPR006084
InterPro:IPR006085InterPro:IPR006086InterPro:IPR008918InterPro:IPR019974
InterPro:IPR020045InterPro:IPR029060KEGG:ath:AT3G28030KO:K10846
ncoils:CoilOMA:FQATMRDPANTHER:PTHR11081PaxDb:Q9ATY5
Pfam:PF00752Pfam:PF00867Pfam:Q9ATY5PhylomeDB:Q9ATY5
PRIDE:Q9ATY5PRINTS:PR00066PRINTS:PR00853PRO:PR:Q9ATY5
PROSITE:PS00841PROSITE:PS00842ProteinModelPortal:Q9ATY5Proteomes:UP000006548
Reactome:R-ATH-5696395Reactome:R-ATH-5696400Reactome:R-ATH-6782135RefSeq:NP_566830.1
scanprosite:PS00841scanprosite:PS00842SMART:SM00279SMART:SM00484
SMART:SM00485SMR:Q9ATY5STRING:3702.AT3G28030.1SUPFAM:SSF47807
SUPFAM:SSF88723TAIR:AT3G28030tair10-symbols:UVH3tair10-symbols:UVR1
UniGene:At.5484UniProt:Q9ATY5
Coordinates (TAIR10) chr3:+:10424321..10431178
Molecular Weight (calculated) 165677.00 Da
IEP (calculated) 4.54
GRAVY (calculated) -0.80
Length 1479 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGVQGLWELL APVGRRVSVE TLANKRLAID ASIWMVQFIK AMRDEKGDMV QNAHLIGFFR RICKLLFLRT KPIFVFDGAT PALKRRTVIA RRRQRENAQT
0101: KIRKTAEKLL LNRLKDIRLK EQAKDIKNQR LKQDDSDRVK KRVSSDSVED NLRVPVEEDD VGASFFQEEK LDEVSQASLV GETGVDDVVK ESVKDDPKGK
0201: GVLLDGDDLD NLVQDSSVQG KDYQEKLDEM LAASLAAEEE RNFTSKASTS AAAIPSEEDE EEDSDGDEEI LLPVMDGNID PAVLASLPPS MQLDLLAQMR
0301: EKLMAENRQK YQKVKKAPEK FSELQIEAYL KTVAFRREIN EVQRSAGGRA VGGVQTSRIA SEANREFIFS SSFAGDKEVL ASAREGRNDE NQKKTSQQSL
0401: PVSVKNASPL KKSDATIELD RDEPKNPDEN IEVYIDERGR FRIRNRHMGI QMTRDIQRNL HLMKEKERTA SGSMAKNDET FSAWENFPTE DQFLEKSPVE
0501: KDVVDLEIQN DDSMLHPPSS IEISFDHDGG GKDLNDEDDM FLQLAAGGPV TISSTENDPK EDTSPWASDS DWEEVPVEQN TSVSKLEANL SNQHIPKDIS
0601: IAEGVAWEEY SCKNANNSVE NDTVTKITKG YLEEEADLQE AIKKSLLELH DKESGDVLEE NQSVRVNLVV DKPSEDSLCS RETVGEAEEE RFLDEITILK
0701: TSGAISEQSN TSVAGNADGQ KGITKQFGTH PSSGSNNVSH AVSNKLSKVK SVISPEKALN VASQNRMLST MAKQHNEEGS ESFGGESVKV SAMPIADEEI
0801: TGFLDEKDNA DGESSIMMDD KRDYSRRKIQ SLVTESRDPS RNVVRSRIGI LHDTDSQNER REENNSNEHT FNIDSSTDFE EKGVPVEFSE ANIEEEIRVL
0901: DQEFVSLGDE QRKLERNAES VSSEMFAECQ ELLQIFGIPY IIAPMEAEAQ CAFMEQSNLV DGIVTDDSDV FLFGARSVYK NIFDDRKYVE TYFMKDIEKE
1001: LGLSRDKIIR MAMLLGSDYT EGISGIGIVN AIEVVTAFPE EDGLQKFREW VESPDPTILG KTDAKTGSKV KKRGSASVDN KGIISGASTD DTEEIKQIFM
1101: DQHRKVSKNW HIPLTFPSEA VISAYLNPQV DLSTEKFSWG KPDLSVLRKL CWEKFNWNGK KTDELLLPVL KEYEKRETQL RIEAFYSFNE RFAKIRSKRI
1201: NKAVKGIGGG LSSDVADHTL QEGPRKRNKK KVAPHETEDN NTSDKDSPIA NEKVKNKRKR LEKPSSSRGR GRAQKRGRGR GRVQKDLLEL SDGSSDDDDD
1301: DDKVVELEAK PANLQKSTRS RNPVMYSAKE DDELDESRSN EGSPSENFEE VDEGRIGNDD SVDASINDCP SEDYIQTGGG FCADEADEIG DAHLEDKATD
1401: DYRVIGGGFC VDEDETAEEN TMDDDAEILK MESEEQRKKG KRRNEEDASL DENVDIHFGN SSAGGLSAMP FLKRKKRKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)