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AT5G49060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.689
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Protein of unknown function DUF1977, DnaJ-like (InterPro:IPR015399), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (TAIR:AT3G57340.2); Has 23804 Blast hits to 23788 proteins in 3287 species: Archae - 182; Bacteria - 9342; Metazoa - 4208; Fungi - 2292; Plants - 2452; Viruses - 18; Other Eukaryotes - 5310 (source: NCBI BLink).
Protein Annotations
BioGrid:20211eggNOG:COG0484eggNOG:KOG0714EMBL:AB023028
EMBL:AK176874EMBL:CP002688EnsemblPlants:AT5G49060EnsemblPlants:AT5G49060.1
entrez:834965Gene3D:1.10.287.110GeneID:834965Genevisible:Q9FH28
GO:GO:0016021Gramene:AT5G49060.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF193
HOGENOM:HOG000233608InParanoid:Q9FH28IntAct:Q9FH28InterPro:IPR001623
InterPro:IPR015399KEGG:ath:AT5G49060KO:K09518OMA:NITNERT
PaxDb:Q9FH28Pfam:PF00226Pfam:PF09320Pfam:Q9FH28
Pfscan:PS50076PhylomeDB:Q9FH28PRIDE:Q9FH28PRINTS:PR00625
PRO:PR:Q9FH28PROSITE:PS50076ProteinModelPortal:Q9FH28Proteomes:UP000006548
RefSeq:NP_199717.2SMART:SM00271SMR:Q9FH28STRING:3702.AT5G49060.1
SUPFAM:SSF46565TAIR:AT5G49060TMHMM:TMhelixUniGene:At.29808
UniProt:Q9FH28
Coordinates (TAIR10) chr5:+:19886764..19888136
Molecular Weight (calculated) 41224.70 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.74
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGNKDDASR CLRIAEDAIV SGDKERALKF INMAKRLNPS LSVDELVAAC DNLDSVSRNS SVSEKLKTMD GDDDKLETGK MKYTEENVDL VRNIIRNNDY
101: YAILGLEKNC SVDEIRKAYR KLSLKVHPDK NKAPGSEEAF KKVSKAFTCL SDGNSRRQFD QVGIVDEFDH VQRRNRRPRR RYNTRNDFFD DEFDPEEIFR
201: TVFGQQREVF RASHAYRTRQ PRNQFREEEI NVAGPSCLTI IQILPFFLLL LLAYLPFSEP DYSLHKNQSY QIPKTTQNTE ISFYVRSASA FDEKFPLSSS
301: ARANLEGNVI KEYKHFLFQS CRIELQKRRW NKKIPTPHCI ELQDRGFVDR HIPI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)