AT5G49060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.689 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Protein of unknown function DUF1977, DnaJ-like (InterPro:IPR015399), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (TAIR:AT3G57340.2); Has 23804 Blast hits to 23788 proteins in 3287 species: Archae - 182; Bacteria - 9342; Metazoa - 4208; Fungi - 2292; Plants - 2452; Viruses - 18; Other Eukaryotes - 5310 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19886764..19888136 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41224.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.63 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 354 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDGNKDDASR CLRIAEDAIV SGDKERALKF INMAKRLNPS LSVDELVAAC DNLDSVSRNS SVSEKLKTMD GDDDKLETGK MKYTEENVDL VRNIIRNNDY 101: YAILGLEKNC SVDEIRKAYR KLSLKVHPDK NKAPGSEEAF KKVSKAFTCL SDGNSRRQFD QVGIVDEFDH VQRRNRRPRR RYNTRNDFFD DEFDPEEIFR 201: TVFGQQREVF RASHAYRTRQ PRNQFREEEI NVAGPSCLTI IQILPFFLLL LLAYLPFSEP DYSLHKNQSY QIPKTTQNTE ISFYVRSASA FDEKFPLSSS 301: ARANLEGNVI KEYKHFLFQS CRIELQKRRW NKKIPTPHCI ELQDRGFVDR HIPI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)