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AT2G19080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:16618929 (2006): unclear
  • PMID:14730085 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : metaxin-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
metaxin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Outer mitochondrial membrane transport complex protein, Metaxin (InterPro:IPR017410); Has 480 Blast hits to 480 proteins in 107 species: Archae - 0; Bacteria - 61; Metazoa - 333; Fungi - 17; Plants - 57; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioGrid:1782eggNOG:ENOG41100SSeggNOG:KOG3028EMBL:AC002392
EMBL:AY070737EMBL:AY087648EMBL:AY142046EMBL:CP002685
EnsemblPlants:AT2G19080EnsemblPlants:AT2G19080.1entrez:816425Gene3D:1.20.1050.10
GeneID:816425Genevisible:O64471GO:GO:0005739GO:GO:0005741
GO:GO:0005743GO:GO:0006626GO:GO:0009536GO:GO:0016021
Gramene:AT2G19080.1hmmpanther:PTHR12289hmmpanther:PTHR12289:SF38HOGENOM:HOG000006368
InParanoid:O64471IntAct:O64471InterPro:IPR010987InterPro:IPR012336
InterPro:IPR017410InterPro:IPR033468KEGG:ath:AT2G19080KO:K17776
OMA:SDQIPYVPaxDb:O64471Pfam:O64471Pfam:PF14497
Pfam:PF17171Pfam:PF17172PhylomeDB:O64471PIR:T00528
PIRSF:PIRSF038150PRIDE:O64471PRO:PR:O64471ProteinModelPortal:O64471
Proteomes:UP000006548RefSeq:NP_565446.1STRING:3702.AT2G19080.1SUPFAM:SSF47616
TAIR:AT2G19080TMHMM:TMhelixUniGene:At.28341UniProt:O64471
Coordinates (TAIR10) chr2:+:8262818..8264746
Molecular Weight (calculated) 35855.50 Da
IEP (calculated) 4.95
GRAVY (calculated) -0.34
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)