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AT3G20000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22968828 (2012): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21311031 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): unclear
  • PMID:15604729 (2004): mitochondrion
  • PMID:15276431 (2004): mitochondrion
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:14730085 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12970493 (2003): mitochondrion
  • PMID:11870776 (2002): mitochondrion
  • PMID:11743115 (2001): mitochondrion
  • PMID:11743114 (2001): mitochondrion
  • PMID:11161051 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : translocase of the outer mitochondrial membrane 40
Curator
Summary (TAIR10)
Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.
Computational
Description (TAIR10)
translocase of the outer mitochondrial membrane 40 (TOM40); FUNCTIONS IN: voltage-gated anion channel activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to mitochondrion, anion transport; LOCATED IN: mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, plasma membrane, mitochondrial outer membrane translocase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: Eukaryotic porin family protein (TAIR:AT1G50400.1); Has 530 Blast hits to 530 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 257; Fungi - 140; Plants - 72; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Protein Annotations
DNASU:821538eggNOG:ENOG410XS2UeggNOG:KOG3296EMBL:AP002050
EMBL:AY050925EMBL:AY117216EMBL:CP002686EnsemblPlants:AT3G20000
EnsemblPlants:AT3G20000.1entrez:821538Gene3D:2.40.160.10GeneID:821538
Genevisible:Q9LHE5GO:GO:0005739GO:GO:0005741GO:GO:0005743
GO:GO:0005774GO:GO:0006626GO:GO:0006811GO:GO:0015266
GO:GO:0015288GO:GO:0015450GO:GO:0030150GO:GO:0046930
Gramene:AT3G20000.1hmmpanther:PTHR10802hmmpanther:PTHR10802:SF4HOGENOM:HOG000240020
InParanoid:Q9LHE5IntAct:Q9LHE5InterPro:IPR023614InterPro:IPR027246
KEGG:ath:AT3G20000KO:K11518MINT:MINT-4330395OMA:PTCFEGA
PaxDb:Q9LHE5Pfam:PF01459Pfam:Q9LHE5PhylomeDB:Q9LHE5
PRIDE:Q9LHE5PRO:PR:Q9LHE5ProteinModelPortal:Q9LHE5Proteomes:UP000006548
RefSeq:NP_188634.1STRING:3702.AT3G20000.1TAIR:AT3G20000tair10-symbols:TOM40
UniGene:At.5942UniProt:Q9LHE5
Coordinates (TAIR10) chr3:+:6967685..6970247
Molecular Weight (calculated) 34252.00 Da
IEP (calculated) 6.81
GRAVY (calculated) -0.21
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)