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AT1G27390.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:16618929 (2006): unclear
  • PMID:14730085 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12606038 (2003): mitochondrion
  • PMID:11870776 (2002): mitochondrion
  • PMID:11161051 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : translocase outer membrane 20-2
Curator
Summary (TAIR10)
Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins
Computational
Description (TAIR10)
translocase outer membrane 20-2 (TOM20-2); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity, metal ion binding; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant specific mitochondrial import receptor subunit TOM20 (InterPro:IPR010547); BEST Arabidopsis thaliana protein match is: translocase of outer membrane 20 kDa subunit 3 (TAIR:AT3G27080.1); Has 98 Blast hits to 94 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKS7eggNOG:ENOG4111JA8EMBL:AC004557EMBL:AJ296024
EMBL:AK228213EMBL:BT024602EMBL:CP002684EnsemblPlants:AT1G27390
EnsemblPlants:AT1G27390.1entrez:839629Gene3D:1.25.40.10GeneID:839629
Genevisible:P82873GO:GO:0005739GO:GO:0005741GO:GO:0005742
GO:GO:0005743GO:GO:0005744GO:GO:0006626GO:GO:0015450
GO:GO:0016021GO:GO:0022626GO:GO:0045040GO:GO:0046872
Gramene:AT1G27390.1hmmpanther:PTHR32409hmmpanther:PTHR32409:SF3HOGENOM:HOG000005870
InParanoid:P82873IntAct:P82873InterPro:IPR010547InterPro:IPR011990
KEGG:ath:AT1G27390MINT:MINT-4330409OMA:WCIANAYPANTHER:PTHR32409:SF3
PaxDb:P82873Pfam:P82873Pfam:PF06552PhylomeDB:P82873
PIR:D86399PRIDE:P82873PRO:PR:P82873ProteinModelPortal:P82873
Proteomes:UP000006548RefSeq:NP_174059.2SMR:P82873STRING:3702.AT1G27390.1
SUPFAM:SSF48452TAIR:AT1G27390tair10-symbols:TOM20-2TMHMM:TMhelix
UniGene:At.10325UniGene:At.71052UniProt:P82873
Coordinates (TAIR10) chr1:-:9513469..9514912
Molecular Weight (calculated) 23171.40 Da
IEP (calculated) 5.62
GRAVY (calculated) -0.52
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)