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AT5G23250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Succinyl-CoA ligase, alpha subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Succinyl-CoA ligase, alpha subunit; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding domain (InterPro:IPR016040), CoA-binding (InterPro:IPR003781), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: Succinyl-CoA ligase, alpha subunit (TAIR:AT5G08300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G23250-MONOMERBioCyc:ARA:GQT-2217-MONOMEREC:6.2.1.5eggNOG:COG0074
eggNOG:KOG1255EMBL:AB007648EMBL:AY087899EMBL:AY092994
EMBL:AY114607EMBL:CP002688EMBL:X69138EMBL:Z18444
EnsemblPlants:AT5G23250EnsemblPlants:AT5G23250.1entrez:832389ExpressionAtlas:Q8LAD2
Gene3D:3.40.50.261Gene3D:3.40.50.720GeneID:832389Genevisible:Q8LAD2
GO:GO:0004775GO:GO:0005507GO:GO:0005524GO:GO:0005739
GO:GO:0006099GO:GO:0048037gramene_pathway:6.2.1.5gramene_pathway:PWY-5690
gramene_pathway:PWYQT-4481hmmpanther:PTHR11117hmmpanther:PTHR11117:SF9HOGENOM:HOG000239685
InParanoid:Q8LAD2InterPro:IPR003781InterPro:IPR005810InterPro:IPR005811
InterPro:IPR016040InterPro:IPR016102InterPro:IPR017440iPTMnet:Q8LAD2
KEGG:00020+6.2.1.5KEGG:00640+6.2.1.5KEGG:00660+6.2.1.5KEGG:00720+6.2.1.5
OMA:GDCKIGIPaxDb:Q8LAD2Pfam:PF00549Pfam:PF02629
Pfam:Q8LAD2PhylomeDB:Q8LAD2PIR:S30579PIRSF:PIRSF001553
PRIDE:Q8LAD2PRINTS:PR01798PRO:PR:Q8LAD2PROSITE:PS00399
PROSITE:PS01216ProteinModelPortal:Q8LAD2Proteomes:UP000006548Reactome:R-ATH-71403
RefSeq:NP_197716.1scanprosite:PS00399scanprosite:PS01216SMART:SM00881
SMR:Q8LAD2STRING:3702.AT5G23250.1SUPFAM:SSF51735SUPFAM:SSF52210
TAIR:AT5G23250TIGRfam:TIGR01019TIGRFAMs:TIGR01019UniGene:At.22464
UniPathway:UPA00223UniProt:Q8LAD2
Coordinates (TAIR10) chr5:+:7830460..7832491
Molecular Weight (calculated) 35318.90 Da
IEP (calculated) 8.74
GRAVY (calculated) 0.06
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRQVTRLLG SLRHSGGGCS GSSKVCSLTS LVQSRSFGTT PPPPAAVFVD KNTRVICQGI TGKNGTFHTE QAIEYGTKMV AGVTPKKGGT EHLGLPVFNT
101: VAEAKAETKA NASVIYVPAP FAAAAIMEGL AAELDLIVCI TEGIPQHDMV RVKAALNSQS KTRLIGPNCP GIIKPGECKI GIMPGYIHKP GKIGIVSRSG
201: TLTYEAVFQT TAVGLGQSTC VGIGGDPFNG TNFVDCLEKF FVDPQTEGIV LIGEIGGTAE EDAAALIKEN GTDKPVVAFI AGLTAPPGRR MGHAGAIVSG
301: GKGTAQDKIK SLRDAGVKVV ESPAKIGAAM FELFQERGLL K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)