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AT5G47210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.704
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Hyaluronan / mRNA binding family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YBHReggNOG:KOG2945EMBL:AB018117EMBL:AK226441
EMBL:AY140040EMBL:BT010371EMBL:CP002688EnsemblPlants:AT5G47210
EnsemblPlants:AT5G47210.1entrez:834767ExpressionAtlas:Q9LVT8GeneID:834767
GO:GO:0005886Gramene:AT5G47210.1hmmpanther:PTHR12299hmmpanther:PTHR12299:SF24
InterPro:IPR006861InterPro:IPR019084ncoils:CoilOMA:NTDEEIF
Pfam:PF04774Pfam:PF09598PhylomeDB:Q9LVT8Proteomes:UP000006548
RefSeq:NP_199532.1SMART:SM01233STRING:3702.AT5G47210.1TAIR:AT5G47210
UniGene:At.24575UniGene:At.24811UniGene:At.25480UniGene:At.27111
UniProt:Q9LVT8
Coordinates (TAIR10) chr5:-:19169222..19171012
Molecular Weight (calculated) 38001.60 Da
IEP (calculated) 9.35
GRAVY (calculated) -1.25
Length 357 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLNPFDLL GDDAEDPSQL AVALSQKVEK AAAAVQPPKA AKFPTKPAPP SQAVRESRNA PQGGRGGTGG RGGFSRGRGN GGYNRDNRNN DAPGNENGFS
101: GGYRRPSEDA DGASRGGSVG GYRVGGGREG PRRGGVANGE SGDVERPPRN YDRHSRTGHG TGMKRNGGGR GNWGTTEDDI PPTSEEPTTE VEKSPVAEKQ
201: GGEDETPEAK KELTAEEKAQ KEAEEAEARE MTLEEYEKIL EEKKKALQAT KVEERKVDTK VFESMQQLSN KKNTDEEIFI KLGSDKEKRK DATEKAKKSL
301: SINEFLKPAD GKRYNGRGGG SRGRGGRGGR GEGGNQRYAK EAAAPAIGDT AQFPSLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)