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AT4G17520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
  • PMID:21841088 (2011): mitochondrion
  • PMID:21166475 (2011): cytosol
  • PMID:17951448 (2007): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Hyaluronan / mRNA binding family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT5G47210.1); Has 14577 Blast hits to 9436 proteins in 968 species: Archae - 15; Bacteria - 3155; Metazoa - 5443; Fungi - 1433; Plants - 1957; Viruses - 142; Other Eukaryotes - 2432 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YBHReggNOG:KOG2945EMBL:AL161546EMBL:AY057494
EMBL:AY081262EMBL:BT001153EMBL:CP002687EMBL:Z97343
EnsemblPlants:AT4G17520EnsemblPlants:AT4G17520.1entrez:827467GeneID:827467
GO:GO:0005634GO:GO:0005777GO:GO:0005829GO:GO:0009735
Gramene:AT4G17520.1hmmpanther:PTHR12299hmmpanther:PTHR12299:SF24HOGENOM:HOG000238039
InterPro:IPR006861InterPro:IPR019084KEGG:ath:AT4G17520KO:K13199
ncoils:CoilOMA:KPEDKEMPfam:PF04774Pfam:PF09598
PhylomeDB:O23593PIR:G71444Proteomes:UP000006548RefSeq:NP_193485.1
SMART:SM01233STRING:3702.AT4G17520.1TAIR:AT4G17520UniGene:At.22483
UniGene:At.48871UniProt:O23593
Coordinates (TAIR10) chr4:+:9771496..9773313
Molecular Weight (calculated) 38907.40 Da
IEP (calculated) 9.25
GRAVY (calculated) -1.38
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVNPFDLL DDDAEDPSQI VASKPLKVVA PVQTAKSGKM PTKPPPPSQA VREARNAPGG GRGAGRGGSY GRGGRGGNNR DSRNNDGPAN ENGYGGGYRR
101: SEEGDGARRG GPVGGYRGDR RGSYSNGGDS GDSERPRKNY DRHSRTAYGN EDKRDGAGRA NWGTTQDDIT PVTEESTAVV DKNLTVEKQD GEGEATDAKN
201: ETPAEKAEEK PEDKEMTLEE YEKVLEEKKK ALQATKVEER KVDTKAFEAM QQLSSKKSNN DEVFIKLGTE KDKRITEREE KTRKSLSINE FLKPADGKSY
301: YRPRGGYQGG REGRGPREGN QRDGGRNLRE GGRNQRDGGA AAQAPTPAIG DSAQFPTLGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)