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AT1G20220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22318864 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alba DNA/RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G76010.1); Has 46942 Blast hits to 19054 proteins in 1334 species: Archae - 23; Bacteria - 15382; Metazoa - 15943; Fungi - 3395; Plants - 5072; Viruses - 633; Other Eukaryotes - 6494 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111WGZeggNOG:KOG2567EMBL:AF439833EMBL:BT020430
EMBL:CP002684EnsemblPlants:AT1G20220EnsemblPlants:AT1G20220.1entrez:838610
Gene3D:3.30.110.20GeneID:838610GO:GO:0003676GO:GO:0005829
GO:GO:0009505GO:GO:0009506Gramene:AT1G20220.1hmmpanther:PTHR13516
hmmpanther:PTHR13516:SF4InterPro:IPR002775KEGG:ath:AT1G20220OMA:GDYGYNN
Pfam:PF01918Proteomes:UP000006548RefSeq:NP_564108.1SMR:Q944A2
STRING:3702.AT1G20220.1SUPFAM:SSF82704TAIR:AT1G20220UniGene:At.15439
UniProt:Q944A2
Coordinates (TAIR10) chr1:-:7005090..7007285
Molecular Weight (calculated) 33765.30 Da
IEP (calculated) 10.24
GRAVY (calculated) -1.09
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKYQRVEKP KADTPIAENE IRITSMGRAR NYITYAMALL QENKSNEVIF KAMGRAINKS VTIVELIKRR IPGLHQITSI GSTDITDTWE PTEEGLQTIE
101: TTRHVSMITI TLSKEQLNTS SVGYQCPIPI EMVKPLAEID YEGQDGSPRG RGGRRGRGGR GRGRGRGGRG NGPANVEYDD GGRGRGGRGN GYVNNEYDDG
201: GRGRGGRGSG YVNNEYNDGG MEQDRSYGRG RGRGRGGGRG GRGRGGYNGP PPPYYEAQQD GGDYGYNNVA PPADHGYDGP PPQGRGRGRG RGGRGRGGGR
301: GGFNRSNGAP IQAAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)