AT1G20220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Alba DNA/RNA-binding protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G76010.1); Has 46942 Blast hits to 19054 proteins in 1334 species: Archae - 23; Bacteria - 15382; Metazoa - 15943; Fungi - 3395; Plants - 5072; Viruses - 633; Other Eukaryotes - 6494 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7005090..7007285 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33765.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.24 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.09 | ||||||||||||||||||||||||||||||||
| Length | 315 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKYQRVEKP KADTPIAENE IRITSMGRAR NYITYAMALL QENKSNEVIF KAMGRAINKS VTIVELIKRR IPGLHQITSI GSTDITDTWE PTEEGLQTIE 101: TTRHVSMITI TLSKEQLNTS SVGYQCPIPI EMVKPLAEID YEGQDGSPRG RGGRRGRGGR GRGRGRGGRG NGPANVEYDD GGRGRGGRGN GYVNNEYDDG 201: GRGRGGRGSG YVNNEYNDGG MEQDRSYGRG RGRGRGGGRG GRGRGGYNGP PPPYYEAQQD GGDYGYNNVA PPADHGYDGP PPQGRGRGRG RGGRGRGGGR 301: GGFNRSNGAP IQAAA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)