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AT1G61580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : R-protein L3 B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
R-protein L3 B (RPL3B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Ribosomal protein L3, conserved site (InterPro:IPR019926), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: ribosomal protein 1 (TAIR:AT1G43170.8); Has 2774 Blast hits to 2767 proteins in 966 species: Archae - 329; Bacteria - 1185; Metazoa - 455; Fungi - 168; Plants - 207; Viruses - 1; Other Eukaryotes - 429 (source: NCBI BLink).
Protein Annotations
BioGrid:27677eggNOG:COG0087eggNOG:KOG0746EMBL:AC005850
EMBL:BT003869EMBL:BT005702EMBL:CP002684EMBL:M32655
EnsemblPlants:AT1G61580EnsemblPlants:AT1G61580.1entrez:842454GeneID:842454
Genevisible:P22738GO:GO:0000027GO:GO:0003735GO:GO:0006412
GO:GO:0016020GO:GO:0022625Gramene:AT1G61580.1hmmpanther:PTHR11363
hmmpanther:PTHR11363:SF6HOGENOM:HOG000107319InParanoid:P22738IntAct:P22738
InterPro:IPR000597InterPro:IPR009000InterPro:IPR019926iPTMnet:P22738
KEGG:ath:AT1G61580KO:K02925OMA:QETHSAMPaxDb:P22738
Pfam:P22738Pfam:PF00297PhylomeDB:P22738PIR:B96641
PIR:JQ0772PRIDE:P22738PRO:PR:P22738PROSITE:PS00474
ProteinModelPortal:P22738Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_176352.1scanprosite:PS00474SMR:P22738STRING:3702.AT1G61580.1
SUPFAM:SSF50447TAIR:AT1G61580tair10-symbols:ARP2tair10-symbols:RPL3B
UniGene:At.36412UniProt:P22738
Coordinates (TAIR10) chr1:-:22720833..22722402
Molecular Weight (calculated) 44548.60 Da
IEP (calculated) 10.78
GRAVY (calculated) -0.68
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPPMVVVGVV GYVKTPRGLR
101: SLCTVWAQHL SEELRRRFYK NWAKSKKKAF TRYSKKHETE EGKKDIQSQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LNEIQINGGD IAKKVDYACS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYRVGK VGQETHSAMT
301: EYDRTEKDIT PMGGFPHYGI VKEDYLMIKG CCVGPKKRVV TLRQTLLKQT SRLAMEEIKL KFIDAASNGG HGRFQTSQEK AKFYGRTIKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)