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AT1G76010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22318864 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alba DNA/RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G20220.1); Has 82924 Blast hits to 30623 proteins in 1819 species: Archae - 80; Bacteria - 18988; Metazoa - 40987; Fungi - 4955; Plants - 6789; Viruses - 861; Other Eukaryotes - 10264 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111WGZeggNOG:KOG2567EMBL:AF412102EMBL:AF428441
EMBL:AY054208EMBL:AY124847EMBL:CP002684EnsemblPlants:AT1G76010
EnsemblPlants:AT1G76010.1entrez:843932Gene3D:3.30.110.20GeneID:843932
GO:GO:0003676GO:GO:0005829Gramene:AT1G76010.1hmmpanther:PTHR13516
hmmpanther:PTHR13516:SF4HOGENOM:HOG000240806InterPro:IPR002775KEGG:ath:AT1G76010
OMA:KADTPIDPfam:PF01918PhylomeDB:Q93VA8Proteomes:UP000006548
RefSeq:NP_565124.1SMR:Q93VA8STRING:3702.AT1G76010.1SUPFAM:SSF82704
SwissPalm:Q93VA8TAIR:AT1G76010UniGene:At.24580UniGene:At.67776
UniGene:At.75066UniProt:Q93VA8
Coordinates (TAIR10) chr1:-:28528505..28530488
Molecular Weight (calculated) 37385.10 Da
IEP (calculated) 10.06
GRAVY (calculated) -1.21
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKYQRVVKP KADTPIDANE IRITSQGRAR NYITYAMTLL QDKGSTEVVF KAMGRAINKT VTIVELIKRR IPDLHQNTSI GSTDITDTWE PTEEGLLPLE
101: TTRHVSMITI TLSKIELNTS SVGYQCPIPI ELVKPMGDID YEGREGSPGG RGRGRGRGRG RGRGRGGRGN AYVNVEHEDG GWEREQSYGR GRGRGRGRSS
201: RGRGRGGYNG PPNEYDAPQD GGYGYDAPHE HRGYDDRGGY DAPPQGRGGY DGPQGRGGYD GPQGRRGYDG PPQGRGGYDG PSQGRGGYDG PSQGRGGYDG
301: PSQGRGGYDG PQGRGRGRGR GRGGRGRGGG RGGDGGFNNR SDGPPVQAAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)