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AT5G60390.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At5g60390-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (mitochondrial marker)

At5g60390-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (mitochondrial marker)

At5g60390-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP binding Elongation factor Tu family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, nucleus, plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT1G07940.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21405BioGrid:22548BioGrid:22549BioGrid:22550
eggNOG:COG5256eggNOG:KOG0052EMBL:AC026875EMBL:AY039583
EMBL:BT000595EMBL:CP002684EMBL:U63815EMBL:X16430
EnsemblPlants:AT1G07920.1EnsemblPlants:AT1G07930.1EnsemblPlants:AT1G07940.1EnsemblPlants:AT1G07940.2
EnsemblPlants:AT5G60390EnsemblPlants:AT5G60390.1EnsemblPlants:AT5G60390.3entrez:836161
entrez:837307entrez:837308entrez:837309ExpressionAtlas:P0DH99
Gene3D:3.40.50.300GeneID:836161GeneID:837307GeneID:837308
GeneID:837309Genevisible:P0DH99GO:GO:0003746GO:GO:0003924
GO:GO:0005525GO:GO:0005739GO:GO:0005886GO:GO:0009506
Gramene:AT1G07920.1Gramene:AT1G07930.1Gramene:AT1G07940.1Gramene:AT1G07940.2
Gramene:AT5G60390.1Gramene:AT5G60390.3HAMAP:MF_00118_Ahmmpanther:PTHR23115
hmmpanther:PTHR23115:SF157InParanoid:P0DH99InterPro:IPR000795InterPro:IPR004160
InterPro:IPR004161InterPro:IPR004539InterPro:IPR009000InterPro:IPR009001
InterPro:IPR027417InterPro:IPR031157iPTMnet:P0DH99KEGG:ath:AT1G07920
KEGG:ath:AT1G07940KO:K03231PaxDb:P0DH99Pfam:P0DH99
Pfam:PF00009Pfam:PF03143Pfam:PF03144Pfam:Q0WL56
Pfam:Q8GTY0Pfam:Q8W4H7Pfscan:PS51722PhylomeDB:P0DH99
PIR:S06724PRIDE:P0DH99PRINTS:PR00315PRO:PR:P0DH99
PROSITE:PS00301PROSITE:PS51722ProteinModelPortal:P0DH99Proteomes:UP000006548
Reactome:R-ATH-156842Reactome:R-ATH-3371511RefSeq:NP_001030993.1RefSeq:NP_001119464.1
RefSeq:NP_200847.1RefSeq:NP_563799.1RefSeq:NP_563800.1RefSeq:NP_563801.1
scanprosite:PS00301SMR:P0DH99STRING:3702.AT5G60390.1SUPFAM:SSF50447
SUPFAM:SSF50465SUPFAM:SSF52540TAIR:AT1G07940TIGRfam:TIGR00483
TIGRFAMs:TIGR00483UniGene:At.21276UniGene:At.21565UniGene:At.23693
UniGene:At.24260UniGene:At.25100UniGene:At.26260UniGene:At.48167
UniGene:At.65864UniGene:At.67247UniGene:At.68737UniGene:At.69737
UniGene:At.71523UniGene:At.75210UniProt:P0DH99UniProt:Q0WL56
UniProt:Q8GTY0UniProt:Q8W4H7
Coordinates (TAIR10) chr5:+:24289226..24290675
Molecular Weight (calculated) 49505.10 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.33
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)