AT1G53645.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; Has 15375 Blast hits to 12179 proteins in 920 species: Archae - 8; Bacteria - 1425; Metazoa - 5915; Fungi - 2848; Plants - 1527; Viruses - 230; Other Eukaryotes - 3422 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20026434..20028587 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 56922.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.42 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.01 | ||||||||||||||||||||||||
| Length | 523 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSAIGRRFS NPNGFTIASL VKQTPFLTQS TSHFSSSSDS SGRGRGRGSG EDGGFPAAGR GQFGVNREPV VPGREPSSAG GYGHGRGRPI QSDSISPAFT 101: SFVKSDSPSI GRGRGSVGSD TVSPFAAEPP RQSPPPPQQQ QSQSQQQRSQ PQQQQPRSQP QQQPNDESQG SPVFVKLQEM QDATSSPPPP ESKPGQADPP 201: DNIFNALGNE FSHPSGAGRG KPLVESAPIR QEDNRQIRRP PPPPQQQRVQ PQQKRAPTVK DGTPKPQLSA EEAGRRARSE LSRGEAEGSS VGGRGGRGRG 301: RGRGARGRGR GRGGDGWRDD KKEEEGEQEA MRIFAGDSAD GEKFAEKMGP ELMKTLAEGF EEICEKALPS TTHDAIIDAY DTNLMIECEP EYIMPDFGSN 401: PDIDEKPPMS LRECLEKVKP FIVAYEGIKD QEEWEEAINE AMTQAPLMKE IVDHYSGPDR VTAKKQNEEL DRIATTLPAS APDSVKRFAD RAALTLKSNP 501: GWGFDKKYQF MDKLVLEVSQ SYK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)