AT2G31060.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : elongation factor family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:13213496..13217686 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57355.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.97 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVEGAILVVD AGEGPLAQTK FVLAKALKYG LRPILLLNKV DRPSVTEERC DEVESLVFDL FANCGATEEQ LDFPVLYASA KEGWASSTYT KDPPVDAKNM 101: ADLLDAVVRH VQPPKANLDE PFLMLVSMME KDFYLGRILT GRVTSGVVRV GDRVNGLRKT DSGSEKIEEA KVVKLMKKKG TTIVSIDAAG AGDIICMAGL 201: TAPSIGHTVA SAEVTTALPT VELDPPTISM TFGVNDSPLA GQDGTHLTGG RIGDRLMAEA ETNLAINVIP GLSESYEVQG RGELQLGILI ENMRREGFEL 301: SVSPPKVMYK TEKGQKLEPI EEVTIEINDE HVGLVMEALS HRRAEVIDMG PVPGNEGRTR LSLTCPSRGL VGYRCVFSSD TRGTGFMHRA FLTYEKYRGP 401: LGNVRKGVLV SMARGTITAH SLMSLEARGI LFVSPGLDSY DGMIIGEHSR ETDLDLNPVK AKELTNIRSA GKDENVKLSP PRLMTLEEAI GYVASDELIE 501: VTPKTIRLRK RCLDVNKRKS QSKRAKD |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)