AT3G02650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62680.1); Has 34543 Blast hits to 12438 proteins in 283 species: Archae - 5; Bacteria - 31; Metazoa - 472; Fungi - 472; Plants - 32537; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:568135..569865 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63841.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.80 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 576 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRSFLCRSQ NASRNLAVTR ISKKKTQTTH SLTSLSRFSY LESSGNASVR NIRFFSTSPP TEENPVSLPA DEIPISSAAE LTLEESVASA LGFSESGDYG 101: GTSVEAVGED GDSEIVAIEN EVYQFDDEKL ESVLSLLRSD EESLEFGLNA LNVDLHLDFV VRVFESPGIS GKNLIRFLKW ATQNEEITVT TSLVESLLVA 201: IASDTRRMDA YGLWDLVKEI GEKESCGVLN LEILNELIAL FGKLGKSKAA FDVFSKTEEF GFTPNAKTYY LTLEALCKRS FMDWACSVCE KMLKSGVLSE 301: GEQMGNIITW FCKEGKAEEA YSVYELAKTK EKSLPPRFVA TLITALCKND GTITFAQEML GDLSGEARRR GIKPFSDVIH SLCRMRNVKD AKALLLDMIS 401: KGPAPGNAVF NLVVHACSKT GDLDEAKEVL KLMESRGLKP DVYTYTVIIS GYAKGGMMDE AQEILAEAKK KHKKLSPVTY HALIRGYCKI EEYDEALKLL 501: NEMDRFGVQP NADEYNKLIQ SFCLKALDWE KAEVLFEEMK QKGLHLNAIS QGLIRAVKEM ESEAKVTEDG NLLAEA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)