suba logo
AT4G11120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : translation elongation factor Ts (EF-Ts), putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
translation elongation factor Ts (EF-Ts), putative; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor Ts, conserved site (InterPro:IPR018101), Translation elongation factor EFTs/EF1B (InterPro:IPR001816), UBA-like (InterPro:IPR009060), Translation elongation factor EFTs/EF1B, dimerisation (InterPro:IPR014039); BEST Arabidopsis thaliana protein match is: elongation factor Ts family protein (TAIR:AT4G29060.1); Has 9471 Blast hits to 8571 proteins in 2664 species: Archae - 0; Bacteria - 5908; Metazoa - 120; Fungi - 25; Plants - 215; Viruses - 0; Other Eukaryotes - 3203 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0264eggNOG:KOG1071EMBL:AF080120EMBL:AL049876
EMBL:AL161531EMBL:BT015741EMBL:BT020174EMBL:CP002687
EnsemblPlants:AT4G11120EnsemblPlants:AT4G11120.1entrez:826713Gene3D:3.30.479.20
GeneID:826713Genevisible:Q5XF75GO:GO:0003746GO:GO:0005739
Gramene:AT4G11120.1HAMAP:MF_00050hmmpanther:PTHR11741HOGENOM:HOG000220986
InParanoid:Q5XF75InterPro:IPR001816InterPro:IPR009060InterPro:IPR014039
InterPro:IPR018101KEGG:ath:AT4G11120OMA:AAMKPQVPANTHER:PTHR11741
PaxDb:Q5XF75Pfam:PF00889Pfam:Q5XF75PhylomeDB:Q5XF75
PIR:T08191PRIDE:Q5XF75PRO:PR:Q5XF75PROSITE:PS01127
ProteinModelPortal:Q5XF75Proteomes:UP000006548RefSeq:NP_192850.2scanprosite:PS01127
SMR:Q5XF75STRING:3702.AT4G11120.1SUPFAM:SSF46934SUPFAM:SSF54713
TAIR:AT4G11120TIGRfam:TIGR00116TIGRFAMs:TIGR00116UniGene:At.3293
UniProt:Q5XF75
Coordinates (TAIR10) chr4:+:6778066..6779934
Molecular Weight (calculated) 43193.70 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.14
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFARAVRRP IGVFYYSVSS RFSSGNEYST VASKFETLSQ YKSSVPSGYT SLVRGFGNFI RSFSSEAPPA VSDQMSLIKQ LRERTSAPIK DVKASLVECN
101: WDLEAAQKDL RKRGKVLASK KSSRTAAEGM LAVAQNEGKV AVIELNCETD FVARNEIFQY LALAMAKHAL LVESSSQQVS GVFPFGPELF EEFKLNLDHP
201: KVNGETTVSN AVTEVAAIMG ENVKFRRGFL MSKSSAGVLS AYLHTSPQPG LGRIAGIVSL EVEGENTQLE AIQRVGSELA MHVVAAKPLF LSKDLVSSEA
301: MANEREILKS QAESTGKNQM AIEKIVEGRL RKYFEEVALM EQKFIVNDAI NIKTLVDNLS KEVGSPVKVT DFLRVEVGEG IERLEASDEP VAQTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)