AT4G11120.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : translation elongation factor Ts (EF-Ts), putative | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
translation elongation factor Ts (EF-Ts), putative; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor Ts, conserved site (InterPro:IPR018101), Translation elongation factor EFTs/EF1B (InterPro:IPR001816), UBA-like (InterPro:IPR009060), Translation elongation factor EFTs/EF1B, dimerisation (InterPro:IPR014039); BEST Arabidopsis thaliana protein match is: elongation factor Ts family protein (TAIR:AT4G29060.1); Has 9471 Blast hits to 8571 proteins in 2664 species: Archae - 0; Bacteria - 5908; Metazoa - 120; Fungi - 25; Plants - 215; Viruses - 0; Other Eukaryotes - 3203 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:6778066..6779934 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 43193.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.55 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 395 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAFARAVRRP IGVFYYSVSS RFSSGNEYST VASKFETLSQ YKSSVPSGYT SLVRGFGNFI RSFSSEAPPA VSDQMSLIKQ LRERTSAPIK DVKASLVECN 101: WDLEAAQKDL RKRGKVLASK KSSRTAAEGM LAVAQNEGKV AVIELNCETD FVARNEIFQY LALAMAKHAL LVESSSQQVS GVFPFGPELF EEFKLNLDHP 201: KVNGETTVSN AVTEVAAIMG ENVKFRRGFL MSKSSAGVLS AYLHTSPQPG LGRIAGIVSL EVEGENTQLE AIQRVGSELA MHVVAAKPLF LSKDLVSSEA 301: MANEREILKS QAESTGKNQM AIEKIVEGRL RKYFEEVALM EQKFIVNDAI NIKTLVDNLS KEVGSPVKVT DFLRVEVGEG IERLEASDEP VAQTA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)