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AT1G60770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02370.1); Has 19797 Blast hits to 7926 proteins in 238 species: Archae - 2; Bacteria - 46; Metazoa - 98; Fungi - 130; Plants - 18960; Viruses - 0; Other Eukaryotes - 561 (source: NCBI BLink).
Protein Annotations
DNASU:842371eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC002292
EMBL:BT002876EMBL:BT004401EMBL:CP002684EnsemblPlants:AT1G60770
EnsemblPlants:AT1G60770.1entrez:842371Gene3D:1.25.40.10GeneID:842371
Genevisible:O22714GO:GO:0005739Gramene:AT1G60770.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF504HOGENOM:HOG000237800InParanoid:O22714InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT1G60770ncoils:CoilOMA:NQPEKVP
PaxDb:O22714Pfam:O22714Pfam:PF01535Pfam:PF13041
Pfscan:PS51375PhylomeDB:O22714PIR:B96633PRIDE:O22714
PRO:PR:O22714PROSITE:PS51375ProteinModelPortal:O22714Proteomes:UP000006548
RefSeq:NP_176276.1SMR:O22714STRING:3702.AT1G60770.1SUPFAM:SSF48452
TAIR:AT1G60770TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.36592
UniProt:O22714
Coordinates (TAIR10) chr1:-:22366959..22368648
Molecular Weight (calculated) 55908.50 Da
IEP (calculated) 9.22
GRAVY (calculated) -0.46
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)