AT1G64880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribosomal protein S5 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, Golgi apparatus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal (InterPro:IPR013810); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT2G33800.1); Has 12743 Blast hits to 11445 proteins in 2840 species: Archae - 327; Bacteria - 5337; Metazoa - 1616; Fungi - 508; Plants - 194; Viruses - 58; Other Eukaryotes - 4703 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24105713..24108780 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60239.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.64 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 515 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLRTRASSW PRLLLRRNPR SSFSRQISTL DSSTSTFPRR ISGYYSSSFF PVNQTPWISS QRYRFFSSST MSPSEADRVV RELIAEVEKE KQREREERQR 101: QGLDYKDIDA EDEEDYLGIE PFIEKLKKQN LKDDGELNRR EESSDSDSEY DEIDLDEERK KEDIFNKKFQ RHKELLQTLT KSETLDEAFR WMNKLDKFEE 201: KHFKLRPEYR VIGELMNRLK VAEGKEKFVL QQKLNRAMRL VEWKEAFDPN NPANYGVIER DNVQGGGEER EERLVADGPK DDNDDDDDEE EFDDMKERDD 301: ILLEKLNAID KKLEIKLSEL DHTFGKKGKR LEEEIRELAE DRNALTEKKR QPLYRKGYDV HVIDVKKVCK VTKGGRVERY TALMVCGNYE GIIGYAKAKA 401: ETGQSAMQKA YEKCFQNLHY VERHEEHTIA HAIQTSYKKT KLYLWPAPTT TGMKAGRVVK TILLLAGFKN IKSKVIGSRN SYNTVKAVLK ALNAVETPKD 501: VQEKFGRTVV EKYLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)