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AT4G30800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, archaeal (InterPro:IPR019978), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: ribosomal protein S11-beta (TAIR:AT5G23740.1); Has 1377 Blast hits to 1375 proteins in 498 species: Archae - 239; Bacteria - 304; Metazoa - 305; Fungi - 147; Plants - 148; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0186eggNOG:KOG1728EMBL:AL022198EMBL:AL161577
EMBL:AY046037EMBL:AY091204EMBL:CP002687EnsemblPlants:AT4G30800
EnsemblPlants:AT4G30800.1entrez:829203Gene3D:2.40.50.140GeneID:829203
Genevisible:O65569GO:GO:0003735GO:GO:0006412GO:GO:0019843
GO:GO:0022627Gramene:AT4G30800.1HAMAP:MF_01345_Bhmmpanther:PTHR10744
hmmpanther:PTHR10744:SF10HOGENOM:HOG000231341InParanoid:O65569InterPro:IPR000266
InterPro:IPR012340InterPro:IPR019979InterPro:IPR028333InterPro:IPR032440
iPTMnet:O65569KEGG:ath:AT4G30800KO:K02949OMA:IEGHYID
PANTHER:PTHR10744PaxDb:O65569Pfam:O65569Pfam:PF00366
Pfam:PF16205PhylomeDB:O65569PIR:E85360PRIDE:O65569
PRINTS:PR00973PRO:PR:O65569ProDom:PD001295PROSITE:PS00056
ProteinModelPortal:O65569Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_194809.1scanprosite:PS00056
SMR:O65569STRING:3702.AT4G30800.1SUPFAM:SSF50249TAIR:AT4G30800
TIGRfam:TIGR03630TIGRFAMs:TIGR03630UniGene:At.2164UniProt:O65569
Coordinates (TAIR10) chr4:+:15001216..15002392
Molecular Weight (calculated) 17932.10 Da
IEP (calculated) 11.41
GRAVY (calculated) -0.58
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEQTEKAFL KQPKVFLSSK KSGKGKRPGK GGNRFWKNIG LGFKTPREAI EGTYIDQKCP FTGTVSIRGR ILSGTCHSAK MQRTIIVRRD YLHFVKKYRR
101: YEKRHSNIPA HVSPCFRVKE GDRVTIGQCR PLSKTVRFNV LKVIPAGSSS IGKKAFTGM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)