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AT5G27330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Prefoldin chaperone subunit family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Prefoldin chaperone subunit family protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKDXeggNOG:ENOG4111BJ8EMBL:CP002688EnsemblPlants:AT5G27330
EnsemblPlants:AT5G27330.1entrez:832791GeneID:832791GO:GO:0005783
GO:GO:0016021Gramene:AT5G27330.1InParanoid:F4K498KEGG:ath:AT5G27330
ncoils:CoilOMA:MEDHDSSPaxDb:F4K498PRIDE:F4K498
ProteinModelPortal:F4K498Proteomes:UP000006548RefSeq:NP_198085.1STRING:3702.AT5G27330.1
TAIR:AT5G27330TMHMM:TMhelixUniGene:At.23424UniProt:F4K498
Coordinates (TAIR10) chr5:-:9632997..9634883
Molecular Weight (calculated) 72015.70 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.78
Length 628 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKKKVSRNS NGASNEQQQI QNQSVPVTSQ KSTKLSRESS MEDHDSSEEK FQNLKSLNAI LLKQTMEKRQ QIESLFQAKD SLEIELVRSG KEKTLLREEL
101: CGSSDENFML KIEMDLLMGF VEGRVKEMGV EVDWLFKEKS DRETEIRDLK REANGLIRKL ESEREEFSRV CDERDLVKSG FDLQSEEMNL LKESVVRLEM
201: REVSLGEEVG RLKCENGRLV KERKKREEVI ERGNRERSEL VESLEEKVRE IDVLKREIEG VVKEKMEVEM VRRDQREMIV ELEKKLGDMN EIVESLTKER
301: EGLRGQVVGL EKSLDEVTEE AKARAEQINE LVKEKTVKES ELEGLMVENN SIKKEIEMAM VQFSDKEKLV EQLLREKNEL VQRVVNQEAE IVELSKLAGE
401: QKHAVAQLRK DYNDQIKNGE KLNCNVSQLK DALALVEVER DNAGKALDEE KRNMVALKEK VVALEKTNEA TGKELEKIKA ERGRLIKEKK ELENRSESLR
501: NEKAILQKDI VELKRATGVL KTELESAGTN AKQSLTMLKS VSSLVCGIEN KKDEKKRGKG MDSYSVQLEA IKKAFKNKES MVEEMKKELA KMKHSVEDAH
601: KKKSFWTLVS SVTSLLMAAS VAYAASLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)