suba logo
AT3G12860.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NOP56-like pre RNA processing ribonucleoprotein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NOP56-like pre RNA processing ribonucleoprotein; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: homolog of nucleolar protein NOP56 (TAIR:AT1G56110.1); Has 9295 Blast hits to 5418 proteins in 524 species: Archae - 248; Bacteria - 207; Metazoa - 3152; Fungi - 1154; Plants - 664; Viruses - 16; Other Eukaryotes - 3854 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1498eggNOG:KOG2573EMBL:AB024033EMBL:CP002686
EnsemblPlants:AT3G12860EnsemblPlants:AT3G12860.1entrez:820468GeneID:820468
GO:GO:0019013GO:GO:0030529Gramene:AT3G12860.1hmmpanther:PTHR10894
hmmpanther:PTHR10894:SF0HOGENOM:HOG000196309InterPro:IPR002687InterPro:IPR012974
InterPro:IPR012976KEGG:ath:AT3G12860KO:K14564ncoils:Coil
OMA:FSEVPTNPfam:PF01798Pfam:PF08156Pfscan:PS51358
PhylomeDB:Q9LTV0PROSITE:PS51358Proteomes:UP000006548RefSeq:NP_187892.2
SMART:SM00931SMR:Q9LTV0STRING:3702.AT3G12860.1SUPFAM:SSF89124
TAIR:AT3G12860UniGene:At.53283UniProt:Q9LTV0
Coordinates (TAIR10) chr3:+:4091678..4093921
Molecular Weight (calculated) 56183.30 Da
IEP (calculated) 9.23
GRAVY (calculated) -0.56
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIYLLSESP SGYGLFEGHG SDEIGQNTEA VRSSVSDLSR FGRVVQLTAF HPFQSALDAL NQINAVSEGY MSDELRSFLE LNLPKVKEGK KPKFSLGVSE
101: PKIGSCIFEA TKIPCQSNEF VHELLRGVRQ HFDRFIKDLK PGDLEKAQLG LAHSYSRAKV KFNVNRVDNM VIQAIFMLDT LDKDINSFAM RVREWYSWHF
201: PELVKIVNDN YLYAKVSKII VDKSKLSEEH IPMLTEALGD EDKAREVIEA GKASMGQDLS PVDLINVQTF AQRVMDLADY RKKLYDYLVT KMSDIAPNLA
301: ALIGEMVGAR LISHAGSLTN LAKCPSSTLQ ILGAEKALFR ALKTRGNTPK YGLIFHSSFI GRASAKNKGR IARFLANKCS IASRIDCFSD NSTTAFGEKL
401: REQVEERLDF YDKGVAPRKN VDVMKEVLEN LEKKDEGEKT VDASEKKKKR KTEEKEEEKE EEKSKKKKKK SKAVEGEELT ATDNGHSKKK KKTKSQDDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)